BAC Information

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BAC

Clone NameMSMg01-469F03
Chromosome11 (Build37)
Map Location 41,137,806 - 41,138,393
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469F03.T7 (MSMg01no469_f03.b1)MSMg01-469F03.TJ (MSMg01no469_f03.g1)
ACCAG552584AG552585
length746732
length of high quality
(start - end)
518 (54 - 571)584 (86 - 669)
definitionCHROMAT_FILE: MSMg01no469_f03.b1 PHD_FILE: MSMg01no469_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:52 2005CHROMAT_FILE: MSMg01no469_f03.g1 PHD_FILE: MSMg01no469_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCACCTCTGAGCCCCATATTTTAATGGGGTTA
TTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATAT
TAGTCCCCTATCTGATTTATGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCCTT
TCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGT
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATC
GATTTGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGT
TGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAG
ATCAAGTGACCATAGGTGTGTGGCTTCATTTCTGGGTCTTCCATTTTATT
CCATTGGNCTACTTGCCTGTCTCTATACCAGTAACATGCAGCTTTCGATC
ACAATTGCTTCTGCAGTAAAGCTTTTAAGTCCGGCATGGTGATTTCCCTA
GAGGTTCCTTTTATCCTTGCAAAAGAGTCTTTGGCAATCTAAGGTN
CCCCCTCTTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATACATAGGACA
TTTCTTTTTCCCGAAGACTAGTTTGATAAAGTAACTTATATTCATATTCA
CAGAGGAAAGTATATGATGGAATGGGCACTGTCTTGAACATGCTCAGTTT
AAGGTGTGTATATCCAAGCATTTTCTGCTTTTGAGCCCATATCATATGCT
CAAAGGAACAAACAGCACACTTCAAAACATATCCAGCTATAGACTAATAA
ACACATGTTCAAAAACAAAAAATGTATATTGTAGACATTTTCAGTTCAGT
GTTATAAATATTAGATTTACTGTAGGGCACATGACATAAGGTGTCATTCT
AATTTAGTGGCCTTTGCTCTGTTCCTCATATGATTCTGAAAAAAAACAAT
TGAACTGAAACCAAACAGTATAGCTACAAAGTGGCATTAGTGATCTTTTC
AGGTAAAACTGTACAGTCTCCATAAGTGGTGAGGGTATTCTCATGGGGAC
TGCTTCAAAGGAGAAGAGATTTAAGAACAGAGAGAAAACTATTGAACAGA
ATATTAGGTATCTACGCCTCTGCTAAAGTAACCATTCTCATCATGTTGAG
CTCAATATAATTAACAGAACCTGAGGACTAATCCTGGGAAAAATAAAAAG
GGGGGGAAAAACAATTTCTCCTCCCAAAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_f03.g1 MSMg01no469_f03.g1 CHROMAT_FILE:
MSMg01no469_f03.g1 PHD_FILE: MSMg01no469_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:52 2005
         (584 letters)



>mm_chr11_41137606_41138593
          Length = 988

 Score = 1067 bits (552), Expect = 0.0
 Identities = 578/588 (98%), Gaps = 4/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatacataggacatttctttttcccgaagactagtttgataaagtaacttatattcat 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 788 ttaatacataggacatttctttttcctgaagactagtttgataaagtaacttatattcat 729

                                                                       
Query: 61  attcacagaggaaagtatatgatggaatgggcactgtcttgaacatgctcagtttaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 attcacagaggaaagtatatgatggaatgggcactgtcttgaacatgctcagtttaaggt 669

                                                                       
Query: 121 gtgtatatccaagcattttctgcttttgagcccatatcatatgctcaaaggaacaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtgtatatccaagcattttctgcttttgagcccatatcatatgctcaaaggaacaaacag 609

                                                                       
Query: 181 cacacttcaaaacatatccagctatagactaataaacacatgttcaaaaacaaa---aaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 608 cacacttcaaaacatatccagctatagactaataaacacatgttcaaaaacaaaaggaaa 549

                                                                       
Query: 238 tgtatattgtagacattttcagttcagtgttataaatattagatttactgtagggcacat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgtatattgtagacattttcagttcagtgttataaatattagatttactgtagggcacat 489

                                                                       
Query: 298 gacataaggtgtcattctaatttagtggcctttgctctgttcctcatatgattctg-aaa 356
           ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 488 gacataaggtgacattctaatttagtgacctttgctctgttcctcatatgattctgaaaa 429

                                                                       
Query: 357 aaaaacaattgaactgaaaccaaacagtatagctacaaagtggcattagtgatcttttca 416
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 428 aaaaaaaattgaactgaaaccaaacagtacagctacaaagtggcattagtgatcttttca 369

                                                                       
Query: 417 ggtaaaactgtacagtctccataagtggtgagggtattctcatggggactgcttcaaagg 476
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggtaaaattgtacagtctccataagtggtgagggtattctcatggggactgcttcaaagg 309

                                                                       
Query: 477 agaagagatttaagaacagagagaaaactattgaacagaatattaggtatctacgcctct 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaagagatttaagaacagagagaaaactattgaacagaatattaggtatctacgcctct 249

                                                           
Query: 537 gctaaagtaaccattctcatcatgttgagctcaatataattaacagaa 584
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctaaagtaaccattctcatcatgttgagctcaatataattaacagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 988
Length adjustment: 10
Effective length of query: 574
Effective length of database: 978
Effective search space:   561372
Effective search space used:   561372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)