BAC Information

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BAC

Clone NameMSMg01-470I04
Chromosome11 (Build37)
Map Location 26,667,137 - 26,822,550
singlet/doubletdoublet
Overlap geneOTTMUSG00000005300, LOC666270
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470I04.T7 (MSMg01no470_i04.b1)MSMg01-470I04.TJ (MSMg01no470_i04.g1)
ACCAG553496AG553497
length779768
length of high quality
(start - end)
168 (88 - 255)269 (80 - 348)
definitionCHROMAT_FILE: MSMg01no470_i04.b1 PHD_FILE: MSMg01no470_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:27 2005CHROMAT_FILE: MSMg01no470_i04.g1 PHD_FILE: MSMg01no470_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,822,386 - 26,822,550)(26,667,137 - 26,667,405)
sequence
CACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCAGAGAACCG
CGGAATTCTTTAAATTACATAAACTTTCATTGTGTGGAAAGGTTCAACAT
GAATATGTGATATTAGGCCATTTTCCTTCCTTTTTAATGTTACTAGCCAC
ATAATCGTTCAAAACTGTGTTTTGAGAATAAAGGGGACACTATTAACAAT
TAATGCCATAAAATCTGTCTAAACCAGAAGGTCTGACAAATTGGGCTGTA
CATCTGTCCTTAGACATTTTTGTCAGCGCTTTGCTTGAGGTGTGGCTACT
GAACACGCATGCCCCCTTTGTATTTTTTTTTCTTTTTGCGCTACTCTCTG
GAAACTGATATCTATTGCGAAGCTAATACTAAGCATGCATTGTACCGATG
CCAGCGTGTTGAGCACTGCACCTCCTTCTATTCTGTTGCAATTGATCACT
TTGCACCTCTCTGTACCCACTCTGACACTGCCTACCTCCTCTGCAAACTA
CTATCCACCATCCGGCTAACCCCCGCCCTTACTTACAGCCTATATTGCTA
TTTCTATTATATCCATCCTCTCTTCCAGCCCCATTTCCCCCTGTCCTCTA
CCCTTGATTTCTCATTCTCTCATGAACTTCTCCTTTATGCACATTACCCC
CCTTCCTCCCCCTTCCGTATACTTGTTCCCTCCTGCCTTTTACTCCCCCA
TTTTGATTCAATTCTTCACCCACCCCTCTTCTCTCCCTCCTCGACCCATC
CCCCTTCCACGTTTTTTCACCCACCCCCG
TCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGTGAACAGCACCTTTA
GTTCCAACTCAAGTTTTTATAAACAATTATTCCATGCTTAGTATTAACTA
TCCATCCACTCATTACTCATCTAGTCATCATTCAAGTTAAATAGATGAGG
AAGCAAGCATAATAAAAATTAAAAATACAGCATGTGCTATAGTACAAATT
AAAAAGCATTATAGGAATGGAAATAAAGAGTCTATAACTTTGCCACATGG
AAATAACCACAGAATGTTTCACAGAGGGTGTCGTTTGTGAACTTGGTCTT
TAACAATGTCCAATTTAATAAAGTGTAGGATAGGCATCTTACACAGCAAA
GAGTGTACTCTGAATTATTTATGTTTGCATATACGGATGCAGAATTTCGT
ATTGCTTATTAGCTGAGCAACCTGTTAATAAAAGACAAATGTGATTATTT
TCTATATATCAATTTCCCACACCCTATCCCCTACTTTGCTAATTATATGC
CCGATTAACCATAACGTAATTCTCAATCATACCTTTTGTTCACCCCTCCC
ACTTTTTCCCATTATTCCACTTTATTCCCCACTATACCCTCCTGTAGCAT
TCTGATTTTAACGGTGCTCTATCCGCACATTTCATCTGTTATTCTCCCTT
TCTTTGCTCCCAATTCCCATACTTTGAAAGTCCTATTTCTTCATCTTTTT
TCACAATCATGTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_i04.b1 MSMg01no470_i04.b1 CHROMAT_FILE:
MSMg01no470_i04.b1 PHD_FILE: MSMg01no470_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:27 2005
         (168 letters)



>mm_chr11_26822186_26822753
          Length = 568

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggttcaacatgaatatgtgatattaggccattttccttcctttttaatgttactagc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 365 aaaggttcaacatgaatatgtgatattaggccattttccttccattttaatgttactagc 306

                                                                       
Query: 61  cacataatcgttcaaaactgtgttttgagaataaaggggacactattaacaattaatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cacataatcgttcaaaactgtgttttgagaataaaggggacactattaacaattaatgcc 246

                                                        
Query: 121 ataaaatctgtctaaaccagaaggtctgacaaattgggctgtaca 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ataaaatctgtctaaaccagaaggtctgacaaattgggctgtaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_i04.g1 MSMg01no470_i04.g1 CHROMAT_FILE:
MSMg01no470_i04.g1 PHD_FILE: MSMg01no470_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:27 2005
         (269 letters)



>mm_chr11_26666937_26667605
          Length = 669

 Score =  482 bits (249), Expect = e-140
 Identities = 264/269 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgtgaacagcacctttagttccaactcaagtttttataaacaattattccatgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatgtgaacagcacctttagttccaactcaagtttttataaacaattattccatgctt 260

                                                                       
Query: 61  agtattaactatccatccactcattactcatctagtcatcattcaagttaaatagatgag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agtattaactatccatccactcattactcatctagtcatcattcaaattaaatagatgag 320

                                                                       
Query: 121 gaagcaagcataataaaaattaaaaatacagcatgtgctatagtacaaattaaaaagcat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcaagtataataaaaattaaaaatacagcatgtgctatagtacaaattaaaaagcat 380

                                                                       
Query: 181 tataggaatggaaataaagagtctataactttgccacatggaaataaccacagaatgttt 240
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 381 tataggaatggaaataaagagtctataactttgccacatgaaaatgaccacagaatgttt 440

                                        
Query: 241 cacagagggtgtcgtttgtgaacttggtc 269
           ||||||||||||||| |||||||||||||
Sbjct: 441 cacagagggtgtcgtctgtgaacttggtc 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)