BAC Information

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BAC

Clone NameMSMg01-470J03
Chromosome11 (Build37)
Map Location 101,278,043 - 101,443,684
singlet/doubletdoublet
Overlap geneAarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
Upstream geneFkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc
Downstream geneLOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J03.T7 (MSMg01no470_j03.b1)MSMg01-470J03.TJ (MSMg01no470_j03.g1)
ACCAG553542AG553543
length774774
length of high quality
(start - end)
134 (181 - 314)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no470_j03.b1 PHD_FILE: MSMg01no470_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:32 2005CHROMAT_FILE: MSMg01no470_j03.g1 PHD_FILE: MSMg01no470_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,278,043 - 101,278,173)(101,443,441 - 101,443,684)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXCCATAGTCAGAAAATCCGCGG
AATTCTGGCGAGGTTATCTTAAAGCCTGTAAAATGCTTCGTGTAGATTTC
CATCTCAGGGCCTTAGCATACCTCTTCTGTCTACCTGAACTATTTCTCTT
GCCCCAGAACCACTAAATAGCTACATTGGGTCATCCCTTCCCTTCGCAGA
CAACTACCAAGCTGTCCAGAAGGCTCTCTACAGAGGAGAGCATTCCACCA
CTCTTTCCCTTTACCCAGCTTATTTCTAGGGACATTATCATTACTTATAC
CTGGCATACCGAGCTGTCTGTATTTTTCCTCCACGTGTATTTGGAGGCCA
CTGCCTTGTTCAGTCTCTCTTCACCGCCTGGAATATGACCCACTGCCTGT
GTCTTACCTACCTAAGCATACGCTGAATGAATAATGCATCGACCCTAAAG
TCCCTGGATTTACTGACGCTGACAAACAGCGAGCGCATTTCTTCCGCCCA
ACCCAACTGCACTGCGTTTTCCCCCCCAGTGCCCCCGCTGACCCCGCTCC
CACATACCTGCTCCCCGCCCCCGCCCAAAAGCCCCCCGCCTTCTCTAACC
ACTCCCAATTCCCCCCCCCCCTCTCTCTCCTGCCCCCCCCCCCCCCCCGG
TCTCGCCCCTCTCCCGCTTTCCTCCCTATACCCCCCCCTGTCTGTTCTAC
CCTGTCCCACTCTACAACACCTTCTGCTCACCCACCCATTATCCCCCTCC
ATCCTCCTCTCCTCTCCACCTCTN
CTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTTTGAAAAGGGTAAAGA
GATGGGGTCCCAGGGACGCCTTACCAGGTGACAACGCCCTCAGCAAAATC
GAAACTGCGGGAGCTGCACATTTAACACAAGCTCGGAGTCCAAGCCGGGC
TCGGCCCCGCCCCTCGCTCCCGCCCCGCCCTCTCCTCCTGAGAGGCCACT
GGAAGACACTTCCGGCTCTGCGAGTCTCACAGGACAAATGTTGCTATCGC
CAGGACCAAACTAGTTCAGGTACGAGTTTCAAATAACACGTATTCACAAT
ACTTTTAAGTTGCTACGTGCAACTACAACGGAACGAACAACTGGACCTAG
ATGGACAGGCCCCTCCAAATATACCCAATTTCTCACATCATGGGGCTCTG
CCTCTATCCCACACCTCAGGAAAACATTTTACACAACAAACAGTTTGGTT
GGCTCGCCGTTTGAATTGTGGTTTTATTTATAATCCCTCCCCAGTTACAT
TGCCATCTACTCCTGAGTAACTCAGACCCCCTTTTTTTTTACCTATCTCC
TCACGCCCCCCAATACCATCTTCACCTATCCCTCCTTGAGCCGGAGTATC
CTACACTCTCCCCTCTAACCTGAATAAATATTTTCATCCGCCTCCTTTCG
CTTATTTCCCTCCCCACCCTTTACCCCCGCGATACCCCCTTCTTTCCTCC
TCCCAGGTACTACTATTACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j03.b1 MSMg01no470_j03.b1 CHROMAT_FILE:
MSMg01no470_j03.b1 PHD_FILE: MSMg01no470_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:32 2005
         (134 letters)



>mm_chr11_101277843_101278376
          Length = 534

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcccttcccttcgcagacaactaccaagctgtccagaaggctctctacagaggagag 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tcatcccttcccttcacagacaactaccaagctgtccagaaggctctctacagaagagag 260

                                                                       
Query: 61  cattccaccactctttccctttacccagcttatttctagggacattatcattacttatac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcccaccactctttccctttacccagcttatttctagggacattatcattacttatac 320

                      
Query: 121 ctggcataccg 131
           |||||||||||
Sbjct: 321 ctggcataccg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_j03.g1 MSMg01no470_j03.g1 CHROMAT_FILE:
MSMg01no470_j03.g1 PHD_FILE: MSMg01no470_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:32 2005
         (244 letters)



>mm_chr11_101443241_101443884
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctttgaaaagggtaaagagatggggtcccagggacgccttaccaggtgacaacgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgctttgaaaagggtaaagagatggggtcccagggacgccttaccaggtgacaacgccc 385

                                                                       
Query: 61  tcagcaaaatcgaaactgcgggagctgcacatttaacacaagctcggagtccaagccggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagcaaaatcgaaactgcgggagctgcacatttaacacaagctcggagtccaagccggg 325

                                                                       
Query: 121 ctcggccccgcccctcgctcccgccccgccctctcctcctgagaggccactggaagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcggccccgcccctcgctcccgccccgccctctcctcctgagaggccactggaagacac 265

                                                                       
Query: 181 ttccggctctgcgagtctcacaggacaaatgttgctatcgccaggaccaaactagttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttccggctctgcgagtctcacaggacaaatgttgctatcgccaggaccaaactagttcag 205

               
Query: 241 gtac 244
           ||||
Sbjct: 204 gtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)