BAC Information

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BAC

Clone NameMSMg01-470O19
Chromosome11 (Build37)
Map Location 49,523,498 - 49,523,854
singlet/doubletsinglet
Overlap geneCnot6
Upstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, LOC666899
Downstream geneLOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470O19.T7 (MSMg01no470_o19.b1)MSMg01-470O19.TJ (MSMg01no470_o19.g1)
ACCAG553812AG553813
length754876
length of high quality
(start - end)
358 (172 - 529)114 (77 - 190)
definitionCHROMAT_FILE: MSMg01no470_o19.b1 PHD_FILE: MSMg01no470_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:59 2005CHROMAT_FILE: MSMg01no470_o19.g1 PHD_FILE: MSMg01no470_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCATCACCATGACCATCAAATGCTATTCCTCAGTGCACAACTTATCCGAA
ATATATAAACGGACAACAAAAAAGTAAAGGCCAAAGAGTAAAATTAAGGC
AGGCTGAATCAGCCTCCGTCTTAGACTCAAATAATCACTCTTTTCTAATC
TTTAAACTACGTACTCAAACACCAAACTCTACTGCATTACATTGTCCTCA
AAGGTACACGGTATACAGTTATACTTGTGTTTGGTCAACACTTAACTTTC
TGGTAACATAGCTACCTCCATCGCCTAAATAACAGGTACAATTAAGAAAA
ACTATTTATTTTGTAGAAGCTAAAAAGTTTTAAAAATTAACAAGAGCTCG
GGCTGGAGAGGTGGCTCAGCAGTTAAGAGCACTGACCGCTCTTCCAAAGG
TCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTGA
TGAGATCTGATCACCTTCTTCTGGTGTGTCTGAAGACAACTACAGTGTAC
TTACATGTAACAAATAAATCTTTAAAAAAAAAATTAACAGATCTTTCTTC
TCCACAGTGATAAGACAAGCAAGCTTGAGCTTCCTAGCCAGTGGACCTTG
TCAGAGGAGAGGGCTGCCTGTGTGCTGGAGATATTGACCCCTCCCCACCC
AGGACCCAAGAAACTCCCAGCATTTTCCTCACGACGCTTTACCTATACCG
TCCC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTCAAAGCATAAGTGGGACCTTGGGTT
TGATTGGCACTGAAAAAGAAGAAAGAGGAAGAGGAAAGATAGGGGGAAAA
AGGGAGGAAAAGGAGAAGAAAGAGGAGGAGGAGAAGGTTTAACATCTAGC
GATCCCCCCCCCCCCCCCNTCCCNCCTCCCTCNTNCCCTCCTTCTCCCTC
TCTTTTTTTTCCCCTCTCCCCCTCTTTTTTTTTTCCCCTTCCCCCCCCCC
TTTCTCTTTTTCNNNCCCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCC
CCNTCNNCCCNCTCTTTTTTTCTCCCCTTCCTTTCTCCCTCTCGTTCTTT
CCTCCTTCTCTCTCCTCCTTCCCCCCCCCCCTTTTCTCTTCTTCTCCCCT
CTCCTCCTCTTCTTTCTCTTCTTCTCCGTCTTCTCCCCTTTTTTCCCCCC
TTCCTCTTCCCCCTCCCCCCCTCTTTTTCCCCCCTCTTCCCCCTCCCTCT
TTCTTTCTTTTCTCTTTCCCTCCCCCTTTCCTTCCCTCCCCCCTCTTTTT
CCTCTCTCTTCTNCCCCCCTTTCTTCCTTTCCTCTCCCTCCTTTTCTCCC
TCTCTCCCTTCTTCTCTTCTTTTTCTCCTCCCTCCCCTCTTCTCTCCTTT
TCTTTCCTCCTTCTCCCCTTCTTTCTCTTCTTCCCCCCCCTTCCCCCCTC
TTTTTTTCTCTTTGTTTCCTCCCTTGTCTGGCCCCTCCTCTTTTCCCTCT
CCTCCTTTTCTCTCTCTCTCCCCTTTTCTTTTTTCTCTTCGCTCNCTTCT
TNCTCTTTCTTCCCCCTTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_o19.b1 MSMg01no470_o19.b1 CHROMAT_FILE:
MSMg01no470_o19.b1 PHD_FILE: MSMg01no470_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:59 2005
         (358 letters)



>mm_chr11_49523298_49524054
          Length = 757

 Score =  607 bits (314), Expect = e-178
 Identities = 347/358 (96%), Gaps = 1/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagactcaaataatcactcttttctaatctttaaactacgtactcaaacaccaaactcta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tagactcaaataatcactcttttctaatctttaaactacttactcaaacaccaaactcta 260

                                                                       
Query: 61  ctgcattacattgtcctcaaaggtacacggtatacagttatacttgtgtttggtcaacac 120
           ||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ctgcattccactgtcctcaaacgtacacggtatacagttatacttgtgtttggtcagcac 320

                                                                       
Query: 121 ttaactttctggtaacatagctacctccatcgcctaaataacaggtacaattaagaaaaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttaactttctggtaacatagctacctccatagcctaaataacaggtacaattaagaaaaa 380

                                                                       
Query: 181 ctatttattttgtagaagctaaaaagttttaaaaattaacaagagctcgggctggagagg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 381 ctatttattttgtagaagctaaaaagttttaaaaattaaca-gagctcgggctggagaga 439

                                                                       
Query: 241 tggctcagcagttaagagcactgaccgctcttccaaaggtcccgagttcaaatcccagca 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggatcagcagttaagagcactgaccgctcttccaaaggtcccgagttcaaatcccagca 499

                                                                     
Query: 301 accacatggtggctcacaaccatctgtgatgagatctgatcaccttcttctggtgtgt 358
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 500 accacatggtggctcacaaccatctgtaatgggatctgatcaccttcttctggtgtgt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space:   261052
Effective search space used:   261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)