Query= MSMg01no471_f06.b1 MSMg01no471_f06.b1 CHROMAT_FILE:
MSMg01no471_f06.b1 PHD_FILE: MSMg01no471_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:32 2005
(672 letters)
>mm_chr11_38555165_38556234
Length = 1070
Score = 1210 bits (626), Expect = 0.0
Identities = 657/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttgtatccccagacacctggtattctgttgtatattttatactggtatatgt 64
||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcagttggatagccagacacctggtattctgttgtatatgttatactggtatatgt 264
Query: 65 tagagtttttcttaaaataacagcaaaggttaacaatgcaagagtatgaacactgtgtca 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagttttccttaaaataacagcaaaggttaacaatgcaagagtatgaacactgtgtca 324
Query: 125 cactgagagttatggtaaatggtgatactttatgtgataaaaattatttgtcttctcttt 184
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactgag--ttatggtaaatggtgatactttatgtgataaaaattatttgtcttctcttt 382
Query: 185 aaaaatacatgttaacaacattgcaaataatctaaaattttctattttttttctatacca 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 aaaaatacatgttaacaacattgcaaataatctaaaattttctatttttttcctatacca 442
Query: 245 tatttgattgtttgaggaagattataaagtatttgaaataaggtataatttagaataaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatttgattgtttgaggaagattataaagtatttgaaataaggtataatttagaataaat 502
Query: 305 gaagtgtggctaacagatttttgtttttgttgttgtttgtttgtttgcatgttatcatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaagtgtggctaacagatttttgtttttgttgttgtttgtttgtttgcatgttatcatga 562
Query: 365 aaccacatgtaacagaattttactaagatccttaggactggtgtggactgagcagacagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaccacatgtaacagaattttactaagatccttaggactggtgtggactgagcagacagg 622
Query: 425 ctttcctaactgggtaagatcacagcctccctatttctactatagccctttgaagcatac 484
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 623 cttttctaactgggtaagatcacagcctccctatttctactacagtcctttgaagcatac 682
Query: 485 ttctcccacttaagcctgagtgtaacataaattcatcctttgttcatttagaatttcctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttctcccacttaagcctgagtgtaacataaattcatcctttgttcatttagaatttcctt 742
Query: 545 gataaatcttcatagagtataagtgtcatcctggtggtcatgagatttaaaacttccatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gataaatcttcatagagtataagtgtcatcctggtggtcatgagatttaaaacttccatt 802
Query: 605 acttattttggagttctaagcaattctgaattacagaaaagctccatatcctgatatttc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 acttattttggagttctaagcaattctgaattacagaaaagctccatatcctgatatttc 862
Query: 665 cttaggga 672
||||||||
Sbjct: 863 cttaggga 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_f06.g1 MSMg01no471_f06.g1 CHROMAT_FILE:
MSMg01no471_f06.g1 PHD_FILE: MSMg01no471_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:32 2005
(620 letters)
>mm_chr11_38752014_38753033
Length = 1020
Score = 1183 bits (612), Expect = 0.0
Identities = 618/620 (99%)
Strand = Plus / Minus
Query: 1 cagaggtagaagagaatatataatcactacaaattagattctgtttttcacccctcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cagaggtagaagagaatatataatcactacaaattagattctgtttttcacccctcccta 761
Query: 61 aatatagatttcatttgcatcgtcatctcatctgctaaatgtcattttttaaatgtgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aatatagatttcatttgcatcgtcatctcatctgctaaatgtcattttttaaatgtgaat 701
Query: 121 ttttaaatgtcagctaacaaggaagtttgactactcagtcactcctgttattctgaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttttaaatgtcagctaacaaggaagtttgactactcagtcactcctgttattctgaatcc 641
Query: 181 actactctattattaagggcattttagcagttgattgctgatatttttaattaagccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 actactctattattaagggcattttagcagttgattgctgatatttttaattaagccctg 581
Query: 241 ccttttgcaaattgacttaaagagatatatttttttaaaaatgtggtatggattatgtgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gcttttgcaaattgacttaaagagatatatttttttaaaaatgtggtatggattatgtgc 521
Query: 301 tgtatagtttagtagcatagccctttattggccaaaacacatttagcaaatttgtacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgtatagtttagtagcatagccctttattggccaaaacacatttagcaaatttgtacaaa 461
Query: 361 gaaatataattggaatataattgccaaaacctccactgagccacaaattacgtattgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaaatataattggaatataattgccaaaacctccactgagccacaaattacgtattgtta 401
Query: 421 tagaccagtatttgggggtttcggtaaaatttctgcttcagatcggggcatggatgagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagaccagtatttgggggtttcggtaaaatttctgcttcagatcggggcatggatgagaa 341
Query: 481 acctaacccaacttgaaaacctctgaagtctctctaactcggtaatcctataattctagt 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acctaactcaacttgaaaacctctgaagtctctctaactcggtaatcctataattctagt 281
Query: 541 gtccctttgcgtctgactccagcaaatcatagctggctctctcctcaactcaggcccctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtccctttgcgtctgactccagcaaatcatagctggctctctcctcaactcaggcccctt 221
Query: 601 ggatgctctctaaaggagac 620
||||||||||||||||||||
Sbjct: 220 ggatgctctctaaaggagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
