BAC Information

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BAC

Clone NameMSMg01-471G24
Chromosome11 (Build37)
Map Location 97,150,257 - 97,150,800
singlet/doubletsinglet
Overlap genenone
Upstream geneHoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps
Downstream geneEG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G24.T7 (MSMg01no471_g24.b1)MSMg01-471G24.TJ (MSMg01no471_g24.g1)
ACCAG554205AG554206
length766784
length of high quality
(start - end)		534 (71 - 604)521 (76 - 596)
definitionCHROMAT_FILE: MSMg01no471_g24.b1 PHD_FILE: MSMg01no471_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:41 2005CHROMAT_FILE: MSMg01no471_g24.g1 PHD_FILE: MSMg01no471_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGTACCAAGCTTATTTGCCTAGCATGTATGAGGCCTT
GGGTTCCATCTACACATTTGTCAAAGTGAACGAAACAACCACCACTGCCA
AACAGCACAGACATGAAAATCAAGGAATTCAGATTCAAATTTGAGAAACC
CTTAAGTCTTTCCTTTTCATAACCGTTCTCCCACGTTGTGGGGGAAGGGC
CACGGAGACACAGGCCGCTGCGTCAGAATCTTGAGACCCATAGGTTACGT
TTCAAAATCACTTCATAGCCAAAAGAAGTTGAAAACTAGTTTTTTGTTTT
GTTTTGTTTTGTTTGCCTCTTCCTCATTATTGTCACTGATTCTTCAAACA
GCAAGGAGAGAAAACTGACACAGGACAAAGATTCAGCAATCTGCCAAGGT
TGATTCCAAGCGAAGGCCGAAAGCCTAGTAAACAGGGGTTCAGGCTGCCA
GCCCTCTTTGCCATCCAAAGACTCCTGCTGTCACGGAGAACTCATGTTCA
GATGTCAGTGAAGCACCCATGCCCTGGGCTTTTTGGAACCCTCCCGACTG
CAGATGTGGTCTCCCACTGTTGTCATAGGCCAGGCCAATGCCTGGGAAAT
TCCAATAGTCTGGCTGTTTGAGCTGAAAGAAATGAAAGGATCGTATGCCC
GGAGTCTAGGCACAGAGGGCACGTGAATAGGTGGTGTCCAGGTCGGGTAA
CAGGAAGAGACAGAAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGATACTCAGGGACAGATAGGAGA
CCGTCAGACGTTCAAAGCCAGCCTGAGTAACTTAGTGTCTCAAATGAAGC
AATAGGGGGCTGGAGAGACGGCTCAGTGGTTAACAGCCATCTGTTGACCT
TGGACCCAGGTTCAATTCCCATGGCTGACAACCATCTGTAACTCCAGTTC
CAGGGGATCCAATACCCTATTCTAACCTCCTTAGGCACCAAGCATAGACA
TACATGACTGCAGAACACTTCCACAAGCAAAATGAAATAAGTAAACCAAA
AGAAAAAAGTAAGCAAAATAAGGCAGCTGATGAGCTGGCTCGGCAGATAG
AGCATCCGCTACCAAGCCTGAGGACCAGAGTTCAATCCCCGAGACCAACA
GGTTGGAAGACAAGAACCTCCACAAATAGCACATGCACCCCTGCCCCACC
CCCACCCCCACCAAATAAATAAAACGTAATAAATAAAAATAAGCCAGGCC
ATGGTGATGCACACTTTTAATCCTTGCACTCGGCGGGGGGAGTGGGGGAG
GGAGATGATCTTATGAGTTTNNNNNNNNNNNNNNNTTTNNNNTNNTTTTT
NTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTNNTTTTTTTT
TTTTTTTNTNNTTTNNTTTTTTTTTTNTTTTTTTTNNTTTTNTTNTNNTT
TTTTTTTTTTNTTTTNTNNNTTTTTTTTTTTTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g24.b1 MSMg01no471_g24.b1 CHROMAT_FILE:
MSMg01no471_g24.b1 PHD_FILE: MSMg01no471_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:41 2005
         (534 letters)



>mm_chr11_97150067_97151000
          Length = 934

 Score =  963 bits (498), Expect = 0.0
 Identities = 528/544 (97%), Gaps = 10/544 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttatttgcctagcatgtatgaggccttgggttccatctacacatttgtcaaagtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agcttatttgcctagcatgtatgaggccttgggttccatctacacatttgtcaaagtgaa 250

                                                                       
Query: 61  cgaaacaaccaccactgccaaacagcacagacatgaaaatcaaggaattcagattcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cgaaacaaccaccactgccaaacagcacagacatgaaaatcaaggaattcagattcaaat 310

                                                                       
Query: 121 ttgagaaacccttaagtctttccttttcataaccgttctcccacgttgtgggggaagggc 180
           |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 311 ttgagaaaaccttaagtctttccttttcataactgttcttccacgttgtgggggaagggc 370

                                                                       
Query: 181 cacggagacacaggccgctgcgtcagaatcttgagacccataggttacgtttcaaaatca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacggagacacaggccgctgtgtcagaatcttgagacccataggttacgtttcaaaatca 430

                                                                       
Query: 241 cttcatagccaaaagaagttgaaaactagttttttgttttgttttgttttgttt------ 294
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||      
Sbjct: 431 cttcatagccaaaagaaattgaaaactagttttttgttttgttttgttttgttttgtttt 490

                                                                       
Query: 295 ----gcctcttcctcattattgtcactgattcttcaaacagcaaggagagaaaactgaca 350
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491 gtttgcctcttcctcattattgtcactgattcttcaaacagcagggagagaaaactgaca 550

                                                                       
Query: 351 caggacaaagattcagcaatctgccaaggttgattccaagcgaaggccgaaagcctagta 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caggacaaagattcagcaatctgccaaggttgattccaagcgaaggccgaaagcctagta 610

                                                                       
Query: 411 aacaggggttcaggctgccagccctctttgccatccaaagactcctgctgtcacggagaa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aacaggggttcaggctgccagccctctttgccatccaaagactcctgctgtcacggagaa 670

                                                                       
Query: 471 ctcatgttcagatgtcagtgaagcacccatgccctgggctttttggaaccctcccgactg 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctcatgttcagatgtcagtgaagcacccatgccctgggctttttggaaccctcccgactg 730

               
Query: 531 caga 534
           ||||
Sbjct: 731 caga 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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