Query= MSMg01no471_l22.b1 MSMg01no471_l22.b1 CHROMAT_FILE:
MSMg01no471_l22.b1 PHD_FILE: MSMg01no471_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:06 2005
(599 letters)
>mm_chr11_49697787_49698785
Length = 999
Score = 1143 bits (591), Expect = 0.0
Identities = 597/599 (99%)
Strand = Plus / Plus
Query: 1 aagcactcagaagaacacagaagaaatattctagagagtaggggttcattcttgaatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcactcagaagaacacagaagaaatattctagagagtaggggttcattcttgaatatt 260
Query: 61 ttctgatttaaaactgctcacctgaaattgatactttcagatcctgatctgtaaattact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgatttaaaactgctcacctgaaattgatactttcagatcctgatctgtaaattact 320
Query: 121 caagatttgataagaggctgagttctctgtgttgttgcagaaatggagttgggacggtca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 caagatttgataagaggctgagttctctgtgttgctgcagaaatggagttgggacggtca 380
Query: 181 taccgtggctacctgcgctcagagcattttctcccttgagcttattttgttaacgattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccgtggctacctgcgctcagagcattttctcccttgagcttattttgttaacgattca 440
Query: 241 tatcttgtgttcagttactttgggagctatggagtgtgttctaggaggaaacttgatagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttgtgttcagttactttgggagctatggagtgtgttctaggaggaaacttgatagc 500
Query: 301 ttttatgaaaagtaccatctaatatgtgattctgtctgcacccgttgcatcctaatggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatgaaaagtaccatctaatatgtgattctgtctgcacccgttgcatcctaatggtt 560
Query: 361 ggtctgatcattggaacctttaatggacaacattaatctgaaatctgaaataaggattag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctgatcattggaacctttaatggacaacattaatctgaaatctgaaataaggattag 620
Query: 421 ctttgtatcatatatggatattttcaggtacagagtggaaatgctagtgtgggtgggggc 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgtatcatatatggatactttcaggtacagagtggaaatgctagtgtgggtgggggc 680
Query: 481 tgagacacctgtctatggcttcaggttattgggccctgggagcctgaagtcccacagtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagacacctgtctatggcttcaggttattgggccctgggagcctgaagtcccacagtgc 740
Query: 541 atcagtcagcatcatgctgtgctcttcctgctgatgcacattctttaaatgacttcccg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcagtcagcatcatgctgtgctcttcctgctgatgcacattctttaaatgacttcccg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_l22.g1 MSMg01no471_l22.g1 CHROMAT_FILE:
MSMg01no471_l22.g1 PHD_FILE: MSMg01no471_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:06 2005
(619 letters)
>mm_chr11_49873127_49874139
Length = 1013
Score = 1139 bits (589), Expect = 0.0
Identities = 609/619 (98%), Gaps = 7/619 (1%)
Strand = Plus / Minus
Query: 1 agacatctgcctgcctctgcctcttcagtgcagagttaaaagtgtgtgttactatacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 agacatctgcctgcctctgcctcttcagtgcagagttaaaagtgtgtgttactatacata 817
Query: 61 gtatttttttaatgttttaagaaatatatgtgcacttcatagaaaatataggagcaatat 120
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gca-ttttttaatgttttaagaaatatatgtgcacttcatagaaaatataggagcaatat 758
Query: 121 tagaaatatagacaaacgtgaacattcaatttaaactttgcctgtcatagcagtgcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tagaaatatagacaaacgtgaacattcaatttaaactttgcctgtcatagcagtgcagtt 698
Query: 181 aaaactataggctcaatattttctgaggtaattagacccatattcagggagaagttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaaactataggctcaatattttctgaggtaattagacccatattcagggagaagttaaaa 638
Query: 241 aacaaacagacaaataaaaacaaatcaaactccttaagtgctaatacagcagcatgactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aacaaacagacaaataaaaacaaatcaaactccttaagtgctaatacagcagcatgactg 578
Query: 301 tattcttcattcccgttcatggtaagtggcccaaattactgctctgtaatggtatttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tattcttcattcccgttcatggtaagtggcccaaattactgctctgtaatggtatttttg 518
Query: 361 cagtatatttgtgactgttttaaactaatttttgtatgtttctgtattcaaagtcagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cagtatatttgtgactgttttaaactaatttttgtatgtttctgtattcaaagtcagttt 458
Query: 421 tctgtattttataaagtatgttttctactgttaataagtattattccccaagaacttgat 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 457 tctgtattttataaagtatgttttctactgttaataagtagtattccccaagaacttgat 398
Query: 481 agaagaaggagaagagctagccaactgcttctgttctagagatgtaaaactgctactgac 540
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 agaagaag------agctagccaactgcttctgtcctagagatgtaaaactgctactgac 344
Query: 541 atggggattagaaaaaccactatttggttaggaatgtccacacattcctaacgacataaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atggggattagaaaaaccactatttggttaggaatgtccacacattcctaacgacataaa 284
Query: 601 gacctatatagattccaat 619
|||||||||||||||||||
Sbjct: 283 gacctatatagattccaat 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1013
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1003
Effective search space: 610827
Effective search space used: 610827
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
