BAC Information

Click to search

BAC

Clone NameMSMg01-472B21
Chromosome11 (Build37)
Map Location 99,907,370 - 99,907,643
singlet/doubletsinglet
Overlap genenone
Upstream geneIgfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34
Downstream geneKrt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472B21.T7 (MSMg01no472_b21.b1)MSMg01-472B21.TJ (MSMg01no472_b21.g1)
ACCAG554726AG554727
length771769
length of high quality
(start - end)		280 (49 - 328)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no472_b21.b1 PHD_FILE: MSMg01no472_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:38 2005CHROMAT_FILE: MSMg01no472_b21.g1 PHD_FILE: MSMg01no472_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTAGGATTTGGTTAGATTGCTATGAGAAGCCCATGAAGAGT
TGGTGGATATTCTCGGTCAGGAGCTGGAAGCCAAGGCTAATAATCAAAAT
ATACATGAAGGAGAAAAAAGCATCCTGGGTATGGCAGGGAAAGACAAGGT
TTCCTTCATACAGTACACCTGAGGTTATCTGAACCACAATAACCCAGAAT
CATAGAGCACTAGATCCAAGGATCCTACTGAGATTTTTTTGTTTTGGTTT
TGGTTTTGGTTTTGGTTTTGGTTTGGNTNNNNNNNNNNNNNNNNNNNNNN
NNNGNNNNNNTNNNNNNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
TTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTN
TTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCNTTTTTTTNTTTT
NTTNTTTTNTTTTTTTTTTTT

GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGACCTTTGGAAGAGCAGTCGGTGC
TCTTAACCCCTGAGCCATCTCACCAGCCCCCTGCCTCCACCTTCTAAGAA
CTAGAATTACAGGCATGCACCACAAAACCTGACTGAATTTTTTCATTTTG
AAAAACTTCTGAGAATCTGAAAATACTTTAAAATAAAAAAAAATTAAAAA
TTGCCAGGTGTGGTGACAAAGGTTTGTGATCCCAGCACTGGGAAGGTAAG
GAGTAGAGAGGTAGAAATTATTAATTTGGAGCCAACCTGGGCTACATAGG
GAGTTCTTGTTTCCAAACAAAACAAAACAAAACAAAACAAAACAAAACAA
AACAAAACAACAACAACAGCAGCAGCAACAACAGCAACAACAACAACAAA
ACCCAAACCACACCAAACGAAACAAGACCAAAAAAAAAAAGTAAAACCAA
CCAAATCCCAAACCAAAATAAAACTAAAATGCACCCTCTAGCTCAGAGCA
CCCATGAGTTTGTGAGGATGCGAAAGGCGGGGTGTGGAGCTTGGAGCCAG
TACTGAGCAGCCTGCATCTCCTTCCTGCTTTTCCCCCGTATTTTCAACTG
GGACAGTTCAAAGTTGCTTTCTCCAAAAACTCCCTGAATGGCCCTGCCTG
CCTCTTATCAATAAAATTGCCGCCACGCCTTTTTTTTTTTTCACTTTTAT
TTGCCCCATTCTCCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_b21.b1 MSMg01no472_b21.b1 CHROMAT_FILE:
MSMg01no472_b21.b1 PHD_FILE: MSMg01no472_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:38 2005
         (280 letters)



>mm_chr11_99907167_99907846
          Length = 680

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaggatttggttagattgctatgagaagcccatgaagagttggtggatatt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaggaattggttagattgctatgagaagcccatgaagagttggtggatatt 263

                                                                       
Query: 64  ctcggtcaggagctggaagccaaggctaataatcaaaatatacatgaaggagaaaaaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcggtcaggagctggaagccaaggctaataatcaaaatatacatgaaggagaaaaaagc 323

                                                                       
Query: 124 atcctgggtatggcagggaaagacaaggtttccttcatacagtacacctgaggttatctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcctgggtatggcagggaaagacaaggtttccttcatacagtacacctgaggttatctg 383

                                                                       
Query: 184 aaccacaataacccagaatcatagagcactagatccaaggatcctactgagatttttttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaccacaataacccagaatcatagagcactagatccaaggatcctactgagatttttttg 443

                                             
Query: 244 ttttggttttggttttggttttggttttggtttg 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttggttttggttttggttttggttttggtttg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |