BAC Information

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BAC

Clone NameMSMg01-472G18
Chromosome11 (Build37)
Map Location 12,300,209 - 12,300,623
singlet/doubletsinglet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472G18.T7 (MSMg01no472_g18.b1)MSMg01-472G18.TJ (MSMg01no472_g18.g1)
ACCAG554959AG554960
length790765
length of high quality
(start - end)
420 (48 - 467)437 (76 - 512)
definitionCHROMAT_FILE: MSMg01no472_g18.b1 PHD_FILE: MSMg01no472_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:03 2005CHROMAT_FILE: MSMg01no472_g18.g1 PHD_FILE: MSMg01no472_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTATACCTTTTATTATTCTTTTAAATTCTGTGTCCTGGAT
TTTATCTAGGAAGTTTCCATTAGGAAACATTTCTAAAGAACTAGTGGGTT
TGGTGGGAGACCTGCTGTTATGACCATTCCTGTTGTTTTTGCCTTTGCAA
TTTGACCTGAGTGTGTTGACATTTTTGGTTGTAATATTCTGATCTTCTTT
AGATTGACTCAGCAGGAGATGCATGACCTGAGCTAGGCCAGGTAAGCTGG
GTAGATAGGCTGTTTAATTGTTCTCAAGGTAGATGGCTTCCGAACAATGC
GTCTAGAGCTAGCTCAGGAAAAGGGAATTCACAGATGAAGAGGGTTCATG
GGCACTGGTCTAGAACTAGGCTTACAGATGGGTTTTCAAATGGTAGAGGG
TTGTGGTAAGGACAGGGAGAGAAAGAAGTTACTTACCCACAACAAGTGGA
TAGTGCCCAGAGAGGTTTTCCAGGCTTCTGGCTTTGCTACTGACTTTATA
GAAATGAACACCCCACTAATGTATTGTAATTGCTGTCACTTATATTTTAA
TTTATTGTTACACTCCCTATCTCTTTTCTCAATTCACGTTATCTATTTTG
CCTTGCATTCTTTTTCCCCACTTCATAACATGTGTTCTATGTCTTTCTTA
GTCTTTTTATCCCCCCCCCATTGGTTTACACTTTTCTTTTACTTCCTCAC
CCCTTACTCTACTATCCTCATCTCCTCCTATTTTTTCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAGATGCTTTTTCTGCATCTAATGAGATGA
TCATGTGGTTTTTGTCTTCGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTAAGGATTTTTGTTTTTATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GACTTCATAAAATGAGTTGGGTAGACTTCTATCTTGGGTAGACTTCTACT
TCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAA
GGTCTGATAGAACTCTGCACTAAACCCGTCTGGGCCTGGGCTTTTTTTGT
GTGGGAGACTATTATTAACTGCTTTTATTTCTTTATGGGAAATGGGACTT
GTTTTAAATTCAACTTGTCCCTGATCTTTTTTTGGTACTGGGCACTTTCT
TTTTTTTTTATCATTTTGCCCCGTTTTTCTTTTCTCTTGATATTTCTTTC
TCTAAAGGACTTTTTCCGTCTTTTCTTTATGAATTATACCCTTTCTCTTA
TTTTTTCTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_g18.b1 MSMg01no472_g18.b1 CHROMAT_FILE:
MSMg01no472_g18.b1 PHD_FILE: MSMg01no472_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:03 2005
         (420 letters)



>mm_chr11_12299826_12300645
          Length = 820

 Score =  743 bits (384), Expect = 0.0
 Identities = 408/416 (98%), Gaps = 1/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtataccttttattattcttttaaattctgtgtcctggattttatctagga 64
           |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattctctg-ataaattttattattcttttaaattctgtgtcctggattttatctagga 740

                                                                       
Query: 65  agtttccattaggaaacatttctaaagaactagtgggtttggtgggagacctgctgttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agtttccattaggaaacatttctaaagaactagtgggtttggtgggagacctgctgttat 680

                                                                       
Query: 125 gaccattcctgttgtttttgcctttgcaatttgacctgagtgtgttgacatttttggttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaccattcctgttgtttttgcctttgcaatttgacctgagtgtgttgacatttttggttg 620

                                                                       
Query: 185 taatattctgatcttctttagattgactcagcaggagatgcatgacctgagctaggccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taatattctgatcttctttagattgactcagcaggagatgcatgacctgagctaggccag 560

                                                                       
Query: 245 gtaagctgggtagataggctgtttaattgttctcaaggtagatggcttccgaacaatgcg 304
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 559 gtaagctgggtagataggctgtttaattggactcaaggtagatggcttccgaacaatgcg 500

                                                                       
Query: 305 tctagagctagctcaggaaaagggaattcacagatgaagagggttcatgggcactggtct 364
           ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 499 tctagagctagctcaggcaaagggaattcacagatgaagagggttcatggccattggtct 440

                                                                   
Query: 365 agaactaggcttacagatgggttttcaaatggtagagggttgtggtaaggacaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agaactaggcttacagatgggttttcaaatggtagagggttgtggtaaggacaggg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)