BAC Information

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BAC

Clone NameMSMg01-472H14
Chromosome11 (Build37)
Map Location 119,487,188 - 119,647,939
singlet/doubletdoublet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H14.T7 (MSMg01no472_h14.b1)MSMg01-472H14.TJ (MSMg01no472_h14.g1)
ACCAG554999AG555000
length754768
length of high quality
(start - end)
555 (72 - 626)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no472_h14.b1 PHD_FILE: MSMg01no472_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:07 2005CHROMAT_FILE: MSMg01no472_h14.g1 PHD_FILE: MSMg01no472_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,647,385 - 119,647,939)(119,487,188 - 119,487,426)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCCGCGG
AATTCATGTTTGCCCTGAAGTCAAAATGATGATGGATCCCCTGTCAACTG
TAATGCAAATGAGATCTGGAGAACTCAAGAGTGCCACCTCTCTGGGAAAG
TGTACTAGCCACAGTGAGCAGGGTCATGTGACCATGTATGTCACCCAGCC
AATTACACAAACCTCACCCAGCAACTCCCCTGACAGCTTTTGTCAATATT
GTGCAAATGTTTTTATTAAAAATCTCTCACCTATTCAAAAATTTATATAT
TTTGAAATATTCCATGTTTCTTGAACCATTAGCTTTGATACATTTTTTAA
GAGAACACTCATGCTTCCTGGATGGAGAGGCAGGGCTTTTGCTCCTTGGG
GTTTTGAGCACAGCCAGGAAGGCAGCTGGGGTAAATATGTATCCTTGGGT
ATACTGCACAGACTAATCTACTGCTCAGACCCAGGGCATGAGGGCTCCAA
GGAGACAGGCAGTCCTAGACACCCAATTACACCTGAAGCAGTTTAAGTGC
TGACCATGCAGCAGAGCAACAAGCAACTATTCTATGACCACACCACTGCA
GCGAAATTCTTAAAGAGATAAGACTATTACAAGGCTTTTTAAGAGTTCTT
GGGCTCTGGGTGTGACTTGGCTCAGCTGGCAGTATAATGAAATGTAGAAG
CCTGTCCTTCCTGTGTGCTTGGNAAGGGATGTATACTGACAGTCTACAAT
AAAN
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGACAAGAGGAAGTCTATTCCGGGCTATTTGCATATCGTG
AGTAGAGGTTTAAAGTTTGTAGTGTTTCTCAGAGCCGTGGCCTGCACCCC
ATAGTCTAGGAGCAGATGCAGTGCTATCTTCATCCTTTGCATGAGCATTT
GTGTGGTTTGGAGCATCTGAGGCTGTTCTCAGTCAGGTCGAGGCTTCGAG
CTGATGGTCTGCATAGATCATTCTGCTGTTTGTAGTGTGTCAACGGCGCT
CTGCACTCAGGCATATTTTTTTTCTGGTGAGGACGTGCAGAGGCTGTGAG
GGCATCAATCCTCTGTTTCTGGCATGGGTTTAATTGTGTAGTTCGACTGG
GAAGCCATATGTTAACTTCTACTTCAGCCAGCCTGATCTCCCTGCGTATG
CCAGCTCTACACAGGCCTATCTTTCTCTGAAATTGAGCCTGAGAGACAGA
AATCCACACTTGACTTGTCACAGACTTTGCTAAATTGAGACATGCTGAAC
TGATCGCTGCCTTCTACTTTTACAGGTGATCCCCTTGTCCGTGCTGCCGT
TGTCTCTAGTAGTGTATTGTTTTGCGTTTGCCTTCAGGATGTGCTTGTCT
TATTTTTTAGTTTTACCTCTTAATATATCTAACCCTTGAGCCCATGTCCC
CTTTTTCTATACGCCATTATTGCACAATTTTTACGGCTGTTGTTCAGTTT
CCCCCCTCTTTCCTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h14.b1 MSMg01no472_h14.b1 CHROMAT_FILE:
MSMg01no472_h14.b1 PHD_FILE: MSMg01no472_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:07 2005
         (555 letters)



>mm_chr11_119647185_119648139
          Length = 955

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatgatgatggatcccctgtcaactgtaatgcaaatgagatctggagaactcaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caaaatgatgatggatcccctgtcaactgtaatgcaaatgagatctggagaactcaagag 696

                                                                       
Query: 61  tgccacctctctgggaaagtgtactagccacagtgagcagggtcatgtgaccatgtatgt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 695 tgccacctctctgggaaagtgtactaaccacagtgagcagggtcatgtgaccatgtatgt 636

                                                                       
Query: 121 cacccagccaattacacaaacctcacccagcaactcccctgacagcttttgtcaatattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cacccagccaattacacaaacctcacccagcaactcccctgacagcttttgtcaatattg 576

                                                                       
Query: 181 tgcaaatgtttttattaaaaatctctcacctattcaaaaatttatatattttgaaatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgcaaatgtttttattaaaaatctctcacctattcaaaaatttatatattttgaaatatt 516

                                                                       
Query: 241 ccatgtttcttgaaccattagctttgatacattttttaagagaacactcatgcttcctgg 300
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccatggttcttgaaccatcagctttgatacattttttaagagaacactcatgcttcctgg 456

                                                                       
Query: 301 atggagaggcagggcttttgctccttggggttttgagcacagccaggaaggcagctgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atggagaggcagggcttttgctccttggggttttgagcacagccaggaaggcagctgggg 396

                                                                       
Query: 361 taaatatgtatccttgggtatactgcacagactaatctactgctcagacccagggcatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 taaatatgtatccttgggtatactgcacagactaatctactgctcagacccagggcatga 336

                                                                       
Query: 421 gggctccaaggagacaggcagtcctagacacccaattacacctgaagcagtttaagtgct 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 335 gggctccaaggagacaggcagtcctagacacccaatcacacctgaagcagtttaagtgct 276

                                                                       
Query: 481 gaccatgcagcagagcaacaagcaactattctatgaccacaccactgcagcgaaattctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaccatgcagcagagcaacaagcaactattctatgaccacaccactgcagcgaaattctt 216

                          
Query: 541 aaagagataagacta 555
           |||||||||||||||
Sbjct: 215 aaagagataagacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_h14.g1 MSMg01no472_h14.g1 CHROMAT_FILE:
MSMg01no472_h14.g1 PHD_FILE: MSMg01no472_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:07 2005
         (240 letters)



>mm_chr11_119486988_119487627
          Length = 640

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattccgggctatttgcatatcgtgagtagaggtttaaagtttgtagtgtttctcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattccgggctatttgcatatcgtgagtagaggtttaaagtttgtagtgtttctcagag 260

                                                                       
Query: 61  ccgtggcctgcaccccatagtctaggagcagatgcagtgctatcttcatcctttgcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtggcctgcaccccatagtctaggagcagatgcagtgctatcttcatcctttgcatga 320

                                                                       
Query: 121 gcatttgtgtggtttggagcatctgaggctgttctcagtcaggtcgaggcttcgagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatttgtgtggtttggagcatctgaggctgttctcagtcaggtcgaggcttcgagctga 380

                                                                      
Query: 181 tggtctgcatagatcattctgctgtttgtagtgtgtcaacggcgctctgcactcaggca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtctgcatagatcattctgctgtttgtagtgtgtcaacggcgctctgcactcaggca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)