BAC Information

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BAC

Clone NameMSMg01-472K08
Chromosome11 (Build37)
Map Location 98,461,793 - 98,636,916
singlet/doubletdoublet
Overlap geneLOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1
Upstream gene2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12
Downstream gene4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K08.T7 (MSMg01no472_k08.b1)MSMg01-472K08.TJ (MSMg01no472_k08.g1)
ACCAG555130AG555131
length808755
length of high quality
(start - end)		123 (78 - 200)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no472_k08.b1 PHD_FILE: MSMg01no472_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:21 2005CHROMAT_FILE: MSMg01no472_k08.g1 PHD_FILE: MSMg01no472_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,461,793 - 98,461,911)(98,636,412 - 98,636,916)
sequence
AGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTTACTAGAGCG
CGGAATTCCCCCCTTACATGAGCTGAGGGCTTTGGGAAGAAGAGGCAGAG
TGTACAAAAGAAAGGATGTTATGCCATGAGAAGATGTGGTCCACATAGGT
GGCCACCGAGGGACCAGCCTTGTGAGTGGGAGGGAGGGAGGGTTTGNANA
AANTNNTNNTTTTATTAATTTTTGTATTATATAGGAAAAGCATGTTTTTT
TTTAGGAGAGACGAGAAAGGGGTGGGGGGAGTGGGAGGAGAGGGACGGGC
GCGCTTTGAGTGCGCTTCCAAAGACACGCACAAAGCGCGGCCCCACCTTT
TTTTTTCCCCCCCCCCCCCCCGCGTGCTGTCGCGATCCGGTTTTTGATTT
CTTTTCCTACCTCTTTTTTTTTTTTTGGCTGTGCCCTCTTCCTTCATAGT
TATTGTGCTGGGCTATTTGTCTCCCACTTTTTCTTTCGTCCTTCTCTTTC
AATCCTCTCTTTGATCTTTTTGGTTTTTATTTTGCTCTATTCCTTGCCTC
TTTCCTCTTTCTCCTGTTTCACTTCTTTCTCTCGCTTTATTTGTTGGTAT
TCTGGCTGAAAATATTAGATTTTTTGTTTTCTTCATTGCATTTATTTTTT
TTAATGCCTCTCACTATCGTCTTTGTCCAAGATATTGTCCCGCCCCCCTT
TTTTTTTTTTTTTTTTTCCCTCAACCCCAAACAAAAACACGCGCCGCACT
CTTTTATTATTTTAGTTCTTCCCACCCTTCCCCCAATTACCCATCCCTTT
ATCTCTCG

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGCCCTTGCCATACAAG
GCTTTCCAAACACGCCACCCTGACTCTTCAGAAAACCCCACCCCAGTCCA
CTTTCAGCTCCTCCCCGCTGCCAGCAAGCACTTTTGCAAAGCAGAAAAGG
AATAGGCACACTCCACCTACATTGTCAGTAGACTACAAATCCCAACAATC
CTGGCGGTGCGCAGGCGCACAGATCTCAACGTGCCGGCTGCTGGAAAAGT
GTGTCACTGGGGCACGAGGCGCTCTTTGGAATCACATGGTACCTGCTCCA
GTGCCGCGTGCGGCCCGGGAACCCTGGGCTGCTGGCGCCTGCGCAGAGCC
CTCTGTCCCAGGGAAAGGCTCGGGCAAAAGGCGGTTGAGATTGGCAGAGT
GAAATATTACTGCTGAGGAAACGTAGCAGGGCACACGTCTCTTTTTGCGT
CCTGGTGCCTCATTTCTCCATCACCTACTTACTTCCTGGNTGCAGCTTCT
CTTCCTTTGGGACTTTTGCACCCGGAGCTCCAGATTCATTTACCCTGCTT
CACTGCGGAGCCTTCAGGAGTGGCATCCGGTGCACTGCATAAACCCGAAT
CTCCTTGCTATCTTTATAAGCCAGAACTGGTGGAGGCTGAATCTTCACAC
AAACCCNCTTCTGCTCTTTCCATGGTAATCTAGAACTTCCGGCGGGCTCA
AAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k08.b1 MSMg01no472_k08.b1 CHROMAT_FILE:
MSMg01no472_k08.b1 PHD_FILE: MSMg01no472_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:21 2005
         (123 letters)



>mm_chr11_98461593_98462115
          Length = 523

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctttgggaagaagaggcagagtgtacaaaagaaaggatgttatgccatgagaagatgt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 201 ggctttgggaagaagaggcagagtgtacaaaagaaaggatgctatgagatgagaagatgt 260

                                                                      
Query: 61  ggtccacataggtggccaccgagggaccagccttgtgagtgggagggagggagggtttg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtccacataggtggccaccgagggaccagccttgtgagtgggagggagggagggtttg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no472_k08.g1 MSMg01no472_k08.g1 CHROMAT_FILE:
MSMg01no472_k08.g1 PHD_FILE: MSMg01no472_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:21 2005
         (505 letters)



>mm_chr11_98636212_98637116
          Length = 905

 Score =  948 bits (490), Expect = 0.0
 Identities = 501/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgcccttgccatacaaggctttccaaacacgccaccctgactcttcagaaaacccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acatgcccttgccatacaaggctttccaaacacgccaccctgactcttcagaaaacccca 646

                                                                       
Query: 61  ccccagtccactttcagctcctccccgctgccagcaagcacttttgcaaagcagaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccccagtccactttcagctcctccccgctgccagcaagcacttttgcaaagcagaaaagg 586

                                                                       
Query: 121 aataggcacactccacctacattgtcagtagactacaaatcccaacaatcctggcggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aataggcacactccacctacattgtcagtagactacaaatcccaacaatcctggcggtgc 526

                                                                       
Query: 181 gcaggcgcacagatctcaacgtgccggctgctggaaaagtgtgtcactggggcacgaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaggcgcacagatctcaacgtgccggctgctggaaaagtgtgtcactggggcacgaggc 466

                                                                       
Query: 241 gctctttggaatcacatggtacctgctccagtgccgcgtgcggcccgggaaccctgggct 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gctccctggaatcacatggtacctgctccagtgccgcgtgcggcccgggaaccctgggct 406

                                                                       
Query: 301 gctggcgcctgcgcagagccctctgtcccagggaaaggctcgggcaaaaggcggttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gctggcgcctgcgcagagccctctgtcccagggaaaggctcgggcaaaaggcggttgaga 346

                                                                       
Query: 361 ttggcagagtgaaatattactgctgaggaaacgtagcagggcacacgtctctttttgcgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 345 ttggcagagtgaaatattactgctgaggaaacgtagcagggcacacgtctctctttgcgt 286

                                                                       
Query: 421 cctggtgcctcatttctccatcacctacttacttcctggntgcagcttctcttcctttgg 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 cctggtgcctcatttctccatcacctacttacttcctggttgcagcttctcttcctttgg 226

                                    
Query: 481 gacttttgcacccggagctccagat 505
           |||||||||||||||||||||||||
Sbjct: 225 gacttttgcacccggagctccagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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