Query= MSMg01no473_l21.b1 MSMg01no473_l21.b1 CHROMAT_FILE:
MSMg01no473_l21.b1 PHD_FILE: MSMg01no473_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:57 2005
(582 letters)
>mm_chr11_91594519_91595500
Length = 982
Score = 996 bits (515), Expect = 0.0
Identities = 566/583 (97%), Gaps = 2/583 (0%)
Strand = Plus / Plus
Query: 1 aatcactgtaaaagtagcatattttaacaacacatttatagattaagtaaaagcgttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aatcactgtaaaagtagcatattttaacaacacatttatagattaagtaaaagtgttatc 260
Query: 61 ttagcttagcaaatgaactcctttcagggggaatataactgtccttcacaccctattgtc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagcttagcaaatgaattcctttcagggggaatataactgtccttcacaccctattgtc 320
Query: 121 ccaacacatataaagatgtacatacgcatctttaatactaacccacttataaccctttgt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaacacatataaagatgtacatacacatctttaatactaacccacttataaccctttgt 380
Query: 181 atggaatagtctcttctagtattccttttcaacagatagcccttcttaagctgttgcttc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaatagtcttttctagtattccttttcaacagatagcccttcttaagctgttgcttc 440
Query: 241 acacagctggtctttgttaaaagaatgatagaaatggctcctgtaataaggcttaatttg 300
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacagctggtcaatgggaaaagaatgatagaaatggctcctgtaataaggcttaatttg 500
Query: 301 gctacactttaaggaaatgcttttaaataatagccagtcatagataatctgttgtaatat 360
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gctacactttaaggaaatgattttaaataatagacagtcatagataatctgttgtaatat 560
Query: 361 ttctggtgtgggaactggatataagtttataaagtaaataaacacaaagacaaaattacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ttctggtgtgggaactggatataagtttataaagtaaataaacacaaagacaaaaatacc 620
Query: 421 aaatcagttctggactcaaacaattggccagaaactaaagtcagagcttcttcaaa-tca 479
||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct: 621 aaatcagttctggactcaaacaattggccagaaactaaagtcagaactt-ttaaaaatca 679
Query: 480 tactgcactacaatttagtaagtgttaaacttagagattctcccagaatacctatagtac 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tactgcactacaatttagtaagtgttaaacttagagattctcccagaatacctatagtat 739
Query: 540 aatctataaggaaggtgatgggtaggcttatcctgactatagt 582
| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtctataaggaaggtgatgggtaggcttatcctgactatagt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_l21.g1 MSMg01no473_l21.g1 CHROMAT_FILE:
MSMg01no473_l21.g1 PHD_FILE: MSMg01no473_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:57 2005
(569 letters)
>mm_chr11_91758581_91759549
Length = 969
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 tctgtatttagtaggagtggtaaagtcagacacaatctattacatgtttatttatagaca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctgtatttagtgggagtggtaaagtcagacacaatctattacatgtttatttatagaca 444
Query: 61 ttatttttattacgactaaaatattttggaaaaagtagaccatatttaaattatagctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatttttattacgactaaaatattttggaaaaagtagaccatatttaaattatagctat 384
Query: 121 aaatttcctcaagtggggttatagatgatgtgggttataccgtcagttttcatttatttt 180
||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 383 aaatttcctcacgtggggttatagatgatgtgggttataccatcagttgtcatttatttt 324
Query: 181 acctgcttattatagctgtgaaaatgatattgttgtttactgaggacaagatatgtattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acctgcttattatagctgtgaaaatgatattgttgtttactgaggacaagatatgtattg 264
Query: 241 tgcttaagaacaaccaggatattcagtgtgacagacactacagagagccatcaaacaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcttaagaacaaccaggatattcagtgtgacagacactacagagagccatcaaacaatc 204
Query: 301 cccagccaggtgcggtggcccatgtctgtaataccaaacttttcagcttctggctgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cccagccaggtgcggtggcccatgtctgtaataccaaacttttcagcttctggctgaatt 144
Query: 361 gtgagttcatttgagggcagcctgagctatattgtaatactgccataaactaacaagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gtgagttcatttgagggcagcctgagctatattgtaatactgccataaactaacaagaga 84
Query: 421 aatacaaacaaaataaaacaaaagtatttcttaattgttataagaagttgcaaacttttc 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 83 aatacaaacaaaataaaacaaaactatttcttaattgttataagaagttgcaaacttttc 24
Query: 481 tgtaaaaaaaatttgaaacaaaaa 504
||| ||||||||||| ||||||||
Sbjct: 23 tgt-aaaaaaatttgcaacaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
