Query= MSMg01no474_a07.b1 MSMg01no474_a07.b1 CHROMAT_FILE:
MSMg01no474_a07.b1 PHD_FILE: MSMg01no474_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:19 2005
(233 letters)
>mm_chr11_5048627_5049259
Length = 633
Score = 398 bits (206), Expect = e-115
Identities = 226/238 (94%), Gaps = 10/238 (4%)
Strand = Plus / Plus
Query: 1 ccccaagtcccgctgcttcagtccttcactctgctctctcctcttgagcgttcttgtggc 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 201 ccccaagtcccgctgcttcagtccttcactctgctcacacctcttgagcgttcttgtggc 260
Query: 61 caagctgccccttctcccactttgatctttagaatctatttacagagctccaccccctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagctgccccttctcccactttgatctttagaatctatttacagagctccaccccctca 320
Query: 121 ctctggcaacttctatgcatcctttgggtcttaacctcaaggtccacattttt-----ac 175
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctctggcaacttctatgcatcctttgggtcttaacctcaaggtccaca-----caggcac 375
Query: 176 agcagctctgagccatattctctcccacaagtgaggggaagagagcctaagcagggac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agcagctctgagccatattctctcccacaagtgaggggaagagagcctaagcagggac 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no474_a07.g1 MSMg01no474_a07.g1 CHROMAT_FILE:
MSMg01no474_a07.g1 PHD_FILE: MSMg01no474_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:19 2005
(507 letters)
>mm_chr11_5185553_5186459
Length = 907
Score = 932 bits (482), Expect = 0.0
Identities = 502/510 (98%), Gaps = 6/510 (1%)
Strand = Plus / Minus
Query: 1 catgaacaggctggctgtgcaggctctggagaagatggaaaccagaaagctcaactccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 707 catgaacaggctggctgtgcaggctctggagaagatggaaaccagaaagttcaactccaa 648
Query: 61 gagcaaggggcgccgggaaggaagctgtggggccctggacacactgagcagcggctccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gagcaaggggcgccgggaaggaagctgtggggccctggacacactgagcagcggctccac 588
Query: 121 atccgactgtgccatctgtctggagaagtacattgacggagaggtagctgcaggatcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atccgactgtgccatctgtctggagaagtacattgacggagaggtagctgcaggatcagg 528
Query: 181 gcctgccttgggtgggaagggatgtacagaggccccaggaggtgctggggactaccatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcctgccttgggtgggaagggatgtacagaggccccaggaggtgctggggactaccatga 468
Query: 241 cc-tngtcntt--agttctccacaacctagattcagtgcgtaagcttctaaaggcatttc 297
|| | | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccat-gac--tagagttctccacaacctagattcagtgcgtaagcttctaaaggcatttc 411
Query: 298 ttcctggggctgggaaaacacaatactctatagatggtctagctaataagtacatggttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttcctggggctgggaaaacacaatactctatagatggtctagctaataagtacatggttg 351
Query: 358 gccagggtagtagcacatgccagtagttttagtgcttgagagactactcaaaagaagtgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gccagggtagtagcacatgccagtagttttagtgcttgagagactactcaaaagaagtgt 291
Query: 418 gagtttaagatcccggctttgccaaaatgcacatggttgaacagaaaatatatagatgta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtttaagatcccggctttgccaaaatgcacatggttgaacagaaaatatatagatgta 231
Query: 478 agatcaagttgcttactttgctttgaagaa 507
||||||||||||||||||||||||||||||
Sbjct: 230 agatcaagttgcttactttgctttgaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
