BAC Information

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BAC

Clone NameMSMg01-474B20
Chromosome11 (Build37)
Map Location 14,850,606 - 14,850,939
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
Downstream geneLOC432537
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474B20.T7 (MSMg01no474_b20.b1)MSMg01-474B20.TJ (MSMg01no474_b20.g1)
ACCAG556253AG556254
length721728
length of high quality
(start - end)
629 (74 - 702)533 (73 - 605)
definitionCHROMAT_FILE: MSMg01no474_b20.b1 PHD_FILE: MSMg01no474_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:27 2005CHROMAT_FILE: MSMg01no474_b20.g1 PHD_FILE: MSMg01no474_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATCCGCGG
AATTCTACTTCTATCACAAGAAAATTCAATCTAAATAGAAAATAGATAAG
TTGTGTATCAGAATTAAAATAACTCAAAGCAAATATTTTCCATATGAAAA
AGTGAAATTTAATGTCAATCTTTCAACATATATGAATATTTCTGGAAAAT
ACAGTACAGGATAATCACCCTACTTTATGTCTAGTATCTACTTCGATGTG
AGTATATACTATGCATGTCTTTTGGGGACTGAATTACTTTACTCAGTATG
ATGTTGTCTATTTTGATTCATTTTTCTGCAAAATTCATGATGCCTTTGCT
TTTAAAAGCTGAATAGCATTTCATTGTGTAAATGAACCACAATTTTTCTA
TCCATTCTTCAATTAAGGGGCAACTTAGTTGTTTCCAGATTTTGGCTAAT
ATGAATAAGGTTGATATGAATATAGGTGAGCAAGATTCTTTGTGGGATGT
TGGGGCATCTTTTGGGTATATGCCAGGAGTGAGAGGTATAGCTGGATTGT
GAAATAGAACTATTCCCAGGTTTCTGAGAAGCAAACAAATTGACTTAGAG
ATTGGTTGTACAAGTTTGTATTTCTATCAGCAATGGAAGACTGTTCCCCT
GCTCCACATCTTCGCCAGCATGTGCTATTCCTTGAGTTTTAATCTTAGCC
ACTCTGATGGGTATAAGATAG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGCTTAATTTAAATATTTTTAGAAAG
ATGGAGTGGCTAAAAGAAAGATTAAGGAGATGGTTTACATTGTTTTGTTA
GAAAGATATAGTACAGTTAGAATTAAGAGCAGAATGTGTCCTCTCCCTTG
TAGAATAGTGACATCTTCTTATGTGAGAAAAGTAGTACAGTAATCCTCCA
TGTGTTTCAAGCATGCAGTTTTAGTTGGAATAGAAAAACAGGCTCAGGAC
AAGTTTATAATTAAAGATTTTATTTCATTCTAGCATGGGTCTGAATTCTT
AGAACTTGTGATCTAGGGATATGGTCACAGGTTTCAATGTAAGCAATGGA
AATTCAGGGTTGTTAATAAATTGTAAATAGTTCTGCTACGAGTATAGTAA
TAGGGGATTGATGATTAGAAGTTTAGCCTAACAAACTTCAAACAATATAA
TGTAGGATAGATGGTGATTTGTTTCTTGGTGAACATAAATTGCCAGCAGC
TAAGCATAGGGAAAAAAAGTGCTACAATACACTGGCTTGTTTAAAGTTTG
TTAATCAGTGTCAAAAAGAATTATTGTTTTGAGCTTACAATGATTTGTTT
GATATAAAGACACATATGATATGTTTAGATAGATATTTGTTTAAAAAGAA
TATATAATCAATAACCATTGTCATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_b20.b1 MSMg01no474_b20.b1 CHROMAT_FILE:
MSMg01no474_b20.b1 PHD_FILE: MSMg01no474_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:27 2005
         (629 letters)



>mm_chr11_14850606_14851634
          Length = 1029

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaatctaaatagaaaatagataagttgtgtatcagaattaaaataactcaaagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 attcaatctaaatagaaaatagataagttgtgtatcagaattaaaataactcaaagcaaa 275

                                                                       
Query: 61  tattttccatatgaaaaagtgaaatttaatgtcaatctttcaacatatatgaatatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tattttccatatgaaaaagtgaaatttaatgtcaatctttcaacatatatgaatatttct 215

                                                                       
Query: 121 ggaaaatacagtacaggataatcaccctactttatgtctagtatctacttcgatgtgagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 214 ggaaaatacagtacaggataatcaccctactttatgtctagtatctactttgatgtgagt 155

                                                                       
Query: 181 atatactatgcatgtcttttggggactgaattactttactcagtatgatgttgtctattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atatactatgcatgtcttttggggactgaattactttactcagtatgatgttgtctattt 95

                                                                       
Query: 241 tgattcatttttctgcaaaattcatgatgcctttgcttttaaaagctgaatagcatttca 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  tgattcatttgcctgcaaaattcatgatgcctttgcttttaaaagctgaatagcatttca 35

                                             
Query: 301 ttgtgtaaatgaaccacaatttttctatccattc 334
           |||||||||||||||||||||| |||||||||||
Sbjct: 34  ttgtgtaaatgaaccacaatttctctatccattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)