NNNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCTCTCCTTTTCCATTTAAGTGGGTTCCACGAATTGAATTTGT
GTCACCAGGCTTAGGCAGCAAGTACTTTACCTGAGGATCTAGTGGAAGGA
GGTCCTTCCACTCAGGCTTTAGAAAAGTGACATGAGTTGACTTAGTTATT
AAAAACATTCACTGCTCTTCCAGAGGACTCGGGTTTAATTCCCAGCACCC
ATATCAGACAGCTCATAACTGACTATACGTCTGGTTTCTGCATGCATGAG
GTGCCTGTACACTCATAAGGCCTCCTTTCCATACACATAAATAATAATAA
AAATATAGAAGGTTATAGATTTGCACACATACTCTTTAGTAGAGAAGTTG
TGACTGGTCAACTAAGACCTAGAAATACATTCATCACTTTTAGTCACCAC
ACAAATATAACTCTCAACAATACAACCTATCAGATACAGTGTTCGTGGAA
ATAGTGACAAAGGCAGTGTGGAACAGGCCGCTGGAATAACTGGAGGCTTT
GCATGATACCAGTGAGAATGTAGAAGTGGCTCCATCATCTTACATAGNCA
TCGTTGGGTCTTATACAATCAGATTTCCACTTGCCATAAGACCCAGCGGG
TTCAGTCCAGGGATCCATTTAAAAACAGAAACACTCCCACAAAATCCCCT
TGCGGCCGCACTGGTTGGCCGCCCTTTAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATCCACTGGAGCCTTAGAATG
TCACTTTGGACCTCCAGGGTAAGAAACACTGCATGAAACTTGGGAGAANN
NGTAGCAATATTAGAGCTTGTGAAGAGAAAAATGNGATCTTGCTGGNTTA
ACTTCTAAAAANNNNGATGNAGAAAGTTNTGANCTNNNNNNAAAATGGTA
ATTATNNNNNNNTNNNNNNNNNNNAAAAAAGATNATTTTTTCTATAAAGA
CAANNNNNNTTTTTTTTTAAAAGTGGAAAAGGGGGGTGGGGGCGCCTTTT
TTTCCCCNNNNGGGAAGGCGCCCCNCNCTCNAAANNCCCAAATTTTTGAA
AAAGGAAAAAAAAAATTTTTTTTAAAGAAACCCCCGCCCCAAAAAAAAAA
AAAGGTGTTTTTTATAAAAAAAACAAAAAAAAAAGGTGGTGGAAAAAAAT
ATTAATTAAACGGGGAAAATTTTTTTTTTCCTTCCCCCCCCGGGAAAAAT
AAAAAAAAACTCTTTTTTCTCCAAGGTGTTTTTTTTAAAAAAAAACCCCC
CCCCTTTTTTTTTTTTTTCTCTTCCCTCACTCCCCTACTATACTAAAAAT
TTTTTTCTTTTTTTCTCTTTTANCAAAAAAAACTAATTTATCCATATATT
TTTTATATATATTTCTTATCTAATATCTCTTTTATTCTGGGGGTT

Query= MSMg01no474_i24.b1 MSMg01no474_i24.b1 CHROMAT_FILE:
MSMg01no474_i24.b1 PHD_FILE: MSMg01no474_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:04 2005
         (543 letters)



>mm_chr11_63564973_63565915
          Length = 943

 Score =  716 bits (370), Expect = 0.0
 Identities = 400/414 (96%), Gaps = 8/414 (1%)
 Strand = Plus / Minus

                                                                       
Query: 131 catgagttgacttagttattaaaaacattcactgctcttccagaggactcgggtttaatt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 943 catgagttgacttagttattaaaaacattcactgctcttccagaggacttgggtttaatt 884

                                                                       
Query: 191 cccagcacccatatcagacagctcataactgactatacgtctggtttctgcatgcatgag 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 cccagcacccatatcagacagctcataactgactatacgtctggtttctgcatgcatgag 824

                                                                       
Query: 251 gtgcctgtacactcataaggcctcctttc-catacacataaataataataaaaatataga 309
           |||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 823 gtgcctatacattcataaggcctccttccacatacacataaataataataaaaatataga 764

                                                                       
Query: 310 aggttatagatttgcacacatactctttagtagagaagttgtgactggtcaactaagacc 369
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 763 aggttatagatttgcacaca-------tagtagagaagttgtgactggtcaactaagacc 711

                                                                       
Query: 370 tagaaatacattcatcacttttagtcaccacacaaatataactctcaacaatacaaccta 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tagaaatacattcatcacttttagtcaccacacaaatataactctcaacaatacaaccta 651

                                                                       
Query: 430 tcagatacagtgttcgtggaaatagtgacaaaggcagtgtggaacaggccgctggaataa 489
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 650 tgagatacagtgttcgtggaaatagtgacaaaggcagtgtggaacaggccactggaataa 591

                                                                 
Query: 490 ctggaggctttgcatgataccagtgagaatgtagaagtggctccatcatcttac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctggaggctttgcatgataccagtgagaatgtagaagtggctccatcatcttac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)