Query= MSMg01no474_o16.b1 MSMg01no474_o16.b1 CHROMAT_FILE:
MSMg01no474_o16.b1 PHD_FILE: MSMg01no474_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:32 2005
(535 letters)
>mm_chr11_83557816_83558750
Length = 935
Score = 886 bits (458), Expect = 0.0
Identities = 514/533 (96%)
Strand = Plus / Plus
Query: 3 ggaattctgtgttttacgcatagcctgagccggacagcttaaaggttactgtacttagca 62
||||||| ||||| | ||| ||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 203 ggaattccgtgttccaggcagagcttgagccagacagcttaaaggttactgtactcagca 262
Query: 63 ccatgaatgaagcagagcagacgggagtgcctggatggtggagacaagtggggcccaaga 122
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcatgaatgaagcagagcggacgggagtgcctggatggtggagacaagtggggcccaaga 322
Query: 123 gaagacatgagggggcaggatggaatgtttccctcaaactcacaagtccccactcatctc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagacatgagggggcaggatggaatgtttccctcaaactcacaagtccccactcatctc 382
Query: 183 tgaatatctctcaggacccaatatagcgcatgcttagggcatcaaaagtaaactcagaat 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaatatctctcaggacccaataaagcgcatgcttagggcatcaaaagtaaactcagaat 442
Query: 243 taaggctatctgaagagagatgagaatganctccttacacctttgacctttgtgtaactt 302
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 443 taaggctatctgaagagagatgagaatgatctccatacacctttgacctttgtgtaactt 502
Query: 303 cagaaatggttttatttccagtctcagtattgtgaaaacatggaattacatgaaaacaga 362
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 503 cagaaatggttttatttccagtctcagtattgtgaaaatatggaattacatgaaaacaca 562
Query: 363 ctgtgtacccccttcagtgcttaagatctctaaaaagtctttattagttgttatggttca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtgtacccccttcagtgcttaagatctctaaaaagtctttattagttgttatggttca 622
Query: 423 agcatggcatgtccccaccatgggcttggatgcttgaatacttggtccctcgtagggggt 482
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 agcatagcatgtccccaccatgggcttggatgcttgaatacttggtccctagtagggggt 682
Query: 483 gctgtctggggaggcttcagaaacttgaggagctagagcttgcttgggggaag 535
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 683 gctgtctggggaggcttcagaaacttgaggagctagagcttgtttgagggaag 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_o16.g1 MSMg01no474_o16.g1 CHROMAT_FILE:
MSMg01no474_o16.g1 PHD_FILE: MSMg01no474_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:32 2005
(282 letters)
>mm_chr11_83736982_83737663
Length = 682
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 tccaccatgtgggtgctgggtcctcttcaataa-tgttaagtcctcttaactcctgagtc 59
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 554 tccaccatgtgggtgctgggtcctcttcaagaacagttaagtcctcttaactcctgagtc 495
Query: 60 ctctctacagccttcttgttccttttcaaaatatgtttattaattctttgagactttcag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctctctacagccttcttgttccttttcaaaatatgtttattaattctttgagactttcag 435
Query: 120 gcagtgtttctctatcacattcacggcccactttttcctctacctcctatagagttagcc 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 gcagtgtttctctatcacattcacggcccactttctcctctacctcctatagagttagcc 375
Query: 180 ctcgcctctccatcccttcccaatgctgtccctgcacccatgcttgtgatgtcacacacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctcgcctctccatcccttcccaatgctgtccctgcacccatgcttgtgatgtcacacacc 315
Query: 240 agagtgtggctgaccttttctttatggtccacacccttaaata 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agagtgtggctgaccttttctttatggtccacacccttaaata 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
