BAC Information

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BAC

Clone NameMSMg01-475A17
Chromosome11 (Build37)
Map Location 119,166,431 - 119,166,708
singlet/doubletsinglet
Overlap genenone
Upstream geneTimp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3
Downstream geneCard14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475A17.T7 (MSMg01no475_a17.b1)MSMg01-475A17.TJ (MSMg01no475_a17.g1)
ACCAG556963AG556964
length741776
length of high quality
(start - end)
243 (82 - 324)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no475_a17.b1 PHD_FILE: MSMg01no475_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:41 2005CHROMAT_FILE: MSMg01no475_a17.g1 PHD_FILE: MSMg01no475_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTTCTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTAATTAACATATAATTGCACTGTGCATGATGTGT
GTGCCATGCTACAGTGAACATGCAGAGGTCAGAGGGCAGCTTTGGAGTCC
ATTCTCTCCTTCAGCTTTTCCAGGTGTCCCTTTTATGTGTATGGTTAAAA
TATTTATTATAAGGTACACTCTTACCAAAAGTGTTGAAAAATGTGTGTGT
GTTTGTGTGTGTGTGTGTGTGAGAGAGAGAGACAGACAGACAGAATGGGA
AGGTGGGAGAGAGGAAGGGAAGATATTCTTTTTGTCTCTTGTCATCTCTC
CCAGCTCCATCTCAGGTCTGCTTGGTTTGTATTGAGTTTTCTCTTTCTGC
GTGAGCACACATTAAAATGTATGCCCAGCACTGGTTGACATCGGCCGACC
CCCACACTCACTCTGCTTTTCTACTTCTTTCTACCACAGAAGACTTAAGT
GACTAATATTAAAACCGAAACCCCTATCTACTTGACACTGGCCGCGTTAC
GCTCGCTCTGTCTATCCAACCCTAAGTTCGTGTCACCCTTTTTGTTTCTT
TTATCTCGCCCCCTGCCTATGCTTGTATCGGTCCCTTTTTTCCGTTCCGC
CCCCCCCCTGCGCCTTTTTTTTTTTTTTCTCCCCGCGCCATTGTCCCCCC
CCCTTTCATCCCCTTATAATCCTCCTTCCTCGGTTCTTCCT
NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCATCCTAGGCTAGGAGAGTG
GCGGTGGTGGTTGGGGGAGCCTTCCTGCATGCACTAGAGAGCGTGCTAAC
TGTGGTGGTGTGACACTGGGCACTGACTTCTGTTGTCCTGCAGGGAGTTG
ACACTGGGAATGTGCAAATGCCAGTAGGTCCTCCCCCTTCTTCTGCCTGA
CTATGCGGAGCTTGGAGGAGCAGCAGACAGCGATTCGCTCTGCCGCTGCT
CTGTGGACTTGACTTTTTGTCTTGCCCTGGCACACTCGCAGCATTGGCAC
CCGGTGGTGGTCAGGGAGTCAGGTGCGCTGCACCCTGCCTGCTTAGGCTT
CTGGCTGAGTGCTGAGAAACTGAAGGCAATGGGTTGGGAAAAGTCCTGGG
ATTCTTGTGCCCATGAGTCACGGTCTGTGACACTCCGGCCTCCGCGGACT
CCCCCCTCCCCCCCGCATGTAATCTCCTCCAGCCCGTTGCTTTTGTCGAC
CCTGCCGTGTCCTAATCATCCCTTTCCCCTTCGTTGGCACCCCTCTCTTT
CGTTATTTCCCTCTCCCTCCACGCCCGACGGACTCCCTTAAATCACTCTT
CTTTTCCTTACTCCCCCCCTTCCCTCTTCACCTTTTTCTTTTACACACCC
ACTCTACTCCCTCTAGCCCTCTTTTCTCCTCCCCCTCCCCGTACCTCTCT
CCCTCCTATCCCTCCTTCCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_a17.g1 MSMg01no475_a17.g1 CHROMAT_FILE:
MSMg01no475_a17.g1 PHD_FILE: MSMg01no475_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:41 2005
         (285 letters)



>mm_chr11_119166227_119166911
          Length = 685

 Score =  491 bits (254), Expect = e-143
 Identities = 272/278 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   ccatcctaggctaggagagtggcggtggtggttgggggagccttcctgcatgcactagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccatcctaggctaggagagtggcggtggtggttgggggagccttcctgcatgcactagag 423

                                                                       
Query: 65  agcgtgctaactgtggtggtgtgacactgggcactgacttctgttgtcctgcagggagtt 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agcgtgctaagtgtggtggtgtgacactgggcactgacttctgttgtcctgcagggagtt 363

                                                                       
Query: 125 gacactgggaatgtgcaaatgccagtaggtcctcccccttcttctgcctgactatgcgga 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 362 gacactgggaatgtgcaaatgccagtaggtcctcccccttcatctgcctgactatgcgga 303

                                                                       
Query: 185 gcttggaggagcagcagacagcgattcgctctgccgctgctctgtggacttgactttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 302 gcttggaggagcagcagacagcgattcgctctgccgctgctctgtggacttgacttcctg 243

                                                 
Query: 245 tcttgccctggcacactcgcagcattggcacccggtgg 282
            ||||||||||||||||||| |||||||||||||||||
Sbjct: 242 ccttgccctggcacactcgctgcattggcacccggtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)