BAC Information

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BAC

Clone NameMSMg01-475D14
Chromosome11 (Build37)
Map Location 38,783,080 - 38,783,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D14.T7 (MSMg01no475_d14.b1)MSMg01-475D14.TJ (MSMg01no475_d14.g1)
ACCAG557100AG557101
length751765
length of high quality
(start - end)
279 (35 - 313)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no475_d14.b1 PHD_FILE: MSMg01no475_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:55 2005CHROMAT_FILE: MSMg01no475_d14.g1 PHD_FILE: MSMg01no475_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCAAAAT
GTTTTTCTCTTGGGAGAGGCCCCTGTGCATAAAATAATTGCTGTAAATTT
CATTCTACACAACCCATTTAGGAGCACGACTGATGTCCAGACTACTTTTA
TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTA
TTTTGTTTTCTTTTGTTTTGTTATTTTATTTTATTTGTTTTTTCTTTTAA
AAAAATTTTTATTAGATGTTTTCTTCATTTACATTTCAAATGCTATCCCT
TTTCCACATTTCTTTTCTTAAAGTCCCCTATACCCTCCCCCTACATGCTC
CCCAACCTACCCACACCCTTTTCCTGGCCCTGGCATTCCCCTGAACTGGG
GCATATAATCTTAACAAGACCAAGGGTCTCTCCTCCTATTGATAACCAAC
GAGGTCATCCTCTGCTACATATGCAACAAGAGGCACAAGCTCTGGGGAGT
ACTGGTTAGTTCATATTTTTGTTCCTCCTATAGGGATTTAGACGCCTTTA
TCCTCCTTGGGTACTTTCTCTAGCTCCTTCCTTGGGGGCCCCGTGTTCCT
TCCTATAGATGACTGTGAGCCTCCACTTCTGTATTCGCCCAGGCACTGGC
TTTTTCTTCCCAGTGTTAGCTACTTCCCGCTCCTGGTCTACAAATCCTCC
CGGGATCATCCCATATTGTCTTGGTTCCTGTTCGCCCTCCCCTTTCCCTC
T
TTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATGCAAGGGTAACAGGAGT
TTGGTCACACGGGGATCTCAGGGTCTCAGAGGGAGTATGACTGCCAAGAA
CTCTGAAACACCCAGAATCACAGGTTCACAGGAGCCTGAAATGACAGGAT
CACAGAGAAAGCTGGACTCTGAAGAGTCCTGACTCAACTGGGATTATAGG
AAGGACAGGCTCCAATCAGATATATTGAGGGCAGAAAGCACTTGAGATAA
TCAGATGGCAGGAGGCAATAGTAAGAACAGAAGTAATATAAGCCAAGGTT
ACCTGGCATCATCAGAGTCACTTCTCATGATGAGATGATGGAGGACTTTA
AGAAGGAAATACAGGAAAACACAAGTAAACAGCTAGAAGCCCTTACAGAG
GAGATGCTAAAATCCCCTAGAGAGTTACAGGAAAAGGCTATTATCCCCGT
GATAGATCCGAACCAAACCATCCAGAATCCCATTATGGCAAGTTACCACC
CCCACCCCTTCCCCCCTCGTAGACCATCCTGTGATATATCTCCCCTTACG
TCATAACTTTCGCTCCCCCCCCCTCTTCTTTTTTTCTTCCCTTCCCCCCC
CCATTCCTCCCCCTTTTCCTCCTGTGCCTCTCTAATTTCCCCCCCCCTTT
CTGTTTTCTCCCCTCTTCCCCCTTTTTTTTCTCCTTTCCCCCTCGCTTTC
CCCCCCTTCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d14.b1 MSMg01no475_d14.b1 CHROMAT_FILE:
MSMg01no475_d14.b1 PHD_FILE: MSMg01no475_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:55 2005
         (279 letters)



>mm_chr11_38782875_38783553
          Length = 679

 Score =  426 bits (220), Expect = e-123
 Identities = 251/274 (91%), Gaps = 22/274 (8%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaaatgtttttctcttgggagaggcccctgtgcataaaataattgctgtaaatt 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaaatgtttttgtcttgggagaggcccctgtgcataaaataattgctgtaaatt 265

                                                                       
Query: 66  tcattctacacaacccatttaggagcacgactgatgtccagactacttttattttatttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcattctacacaacccatttaggagcacgactgatgtccagactacttttattttatttt 325

                                                                       
Query: 126 attttattttattttattttattttattttattttattttattttgttttcttttgtttt 185
           |||||||||||||||||||||||||||||||||||                    |||||
Sbjct: 326 attttattttattttattttattttattttatttt--------------------gtttt 365

                                                                       
Query: 186 gttattttattttatttgttttttctttt-aaaaaaatttttattagatgttttcttcat 244
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 366 gttattttattttatttgttttttctttttaaaaaaatttt-attagatgttttcttcat 424

                                             
Query: 245 ttacatttcaaatgctatcccttttccacatttc 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 425 ttacatttcaaatgctatcccttttccacatttc 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)