BAC Information

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BAC

Clone NameMSMg01-476B20
Chromosome11 (Build37)
Map Location 102,704,817 - 102,705,202
singlet/doubletsinglet
Overlap geneEftud2
Upstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b
Downstream geneCcdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B20.T7 (MSMg01no476_b20.b1)MSMg01-476B20.TJ (MSMg01no476_b20.g1)
ACCAG557782AG557783
length777770
length of high quality
(start - end)
384 (41 - 424)386 (72 - 457)
definitionCHROMAT_FILE: MSMg01no476_b20.b1 PHD_FILE: MSMg01no476_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:07 2005CHROMAT_FILE: MSMg01no476_b20.g1 PHD_FILE: MSMg01no476_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAACTTTCCCCGAGTAACTCCAAAGCTTTCCGGCCGTGTTTGTTAGAAT
TCCATCCCTGCTGCTGTTGGAGACTGACTGTTACCTTGCTGCTGTTGCAG
ATTGACTGTTACCCTGCTGCTGTTGCAGACTGACTGTTACCTTGCTGCTG
TTGCAGACTGACTGTTACCTTGCTGCTGTTGCAGATTGACTGTTACCTTG
GTGCTGTTGCAGATTGACTGTTACCTTGGTGCTGTTGCAGACTGACTGTT
ACCTTGCTGCTGTTGTTTACTGACTGTTACCCTGCTGCTGTTGCAGACTG
ACTGTTACCTTGCTGCTGTTGCAGACTGACTGTTACCCTGCTGCTGTTGC
AGACTGACTGTTACCTTGCTGCTGTTGCAGATCGACTGTTACCCTGCTGC
TGTTGTAGACTGACTGTTACCTTGCTGTTGCTGCAGACTGACTGCCACCT
TGCTGCTGCTGCATATTGACTGTTACCTTGGTGCTGTTGCACATTGACTG
CTCTCCTGTTGTTGTTCCCCACCCACTGTTTCTCTGTATTCTGCTGCCCC
ACCCCTTTCTCCCTCGCCGCTGTCCCCTATCCAATGTATTCTTTGCTCTC
TTCCCCTTTTTACCCTCTTGTCCTTTTTCCCTTCCTTTGTCCCCCCTCTT
TTTTTCCCCTTTTCTCCTTCTCCCCCTTCCCCTTTTCTTCCCCCCCTCCC
TTTCCCCCTCCCTTCCTCCCTCTCTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGATGCATCCCTGTTCTCTCTCTGCAGAG
CATCCTATGCAGTTCTACAGCAGCAGGCCAAAGAACTGTCCACATCACCA
CCAAAGAGTCCGGGAGCAGCATCAGGAGGAAGTGGGGGCACAAACTAGGC
TCTAAATCTAGGGCTTTAATTATGGTCTTCCAAGAAAGCTCCCGCCACCT
GCCGCTCACTGACCACCCCTCAGAGGACGACAGGAACAGTGCTAGAGAAC
TGCATCTGTCCACTCTCTTGTTCCAGCTCCAGAAGTACAGCTGCCCTGTA
ATGCAGGTTCGTGCAGACAATGTCATACCATGCATGGTGCTAGGTCAAGA
CTTGGTGGTAAGTCTGAGAGTCAGCTCCCACTCTCCATGACACCATCTAC
TCTGAGACAATCAGCAGAGACAGAATAGTTTTTCTCCTAATGTAGGGACA
AGAATAACTGTGCCTTGGTAGCCTTGACTTTACATGACACTGAAAATGAC
TCAGTGAGTCGGGCGATCTGTCTCTAGATCCCTCCCTCACGAAGATCTAC
TGAAAGCATTTTCTACTGACGGCCTTCTAGCGGCTCCCCTATGGGCTAAT
TTTTTGTCTCTCCCTACTTCCCTTTGTTGCTGACTTTTTTTTTCCTTGCC
GTTTGTCTTTGTTTTCCTCCTCTTATCCCTTTTTTCCTCCTTTTCTGCCC
CCTTTTATTTCTCCTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b20.g1 MSMg01no476_b20.g1 CHROMAT_FILE:
MSMg01no476_b20.g1 PHD_FILE: MSMg01no476_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:07 2005
         (386 letters)



>mm_chr11_102704617_102705402
          Length = 786

 Score =  700 bits (362), Expect = 0.0
 Identities = 380/386 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgcatccctgttctctctctgcagagcatcctatgcagttctacagcagcaggccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgcatccctgttctctctctgcagagcatcctatgcagttctacagcagcaggccaa 260

                                                                       
Query: 61  agaactgtccacatcaccaccaaagagtccgggagcagcatcaggaggaagtgggggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactgtccacatcaccaccaaagagtccgggagcagcatcaggaggaagtgggggcac 320

                                                                       
Query: 121 aaactaggctctaaatctagggctttaattatggtcttccaagaaagctcccgccacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactaggctctaaatctagggctttaattatggtcttccaagaaagctcccgccacctg 380

                                                                       
Query: 181 ccgctcactgaccacccctcagaggacgacaggaacagtgctagagaactgcatctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgctcactgaccacccctcagaggacgacaggaacagtgctagagaactgcatctgtcc 440

                                                                       
Query: 241 actctcttgttccagctccagaagtacagctgccctgtaatgcaggttcgtgcagacaat 300
           ||||||  | ||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 441 actctcaggctccagctccagaagtacagctgccctgtaatgcagggccgtgcagacaat 500

                                                                       
Query: 301 gtcataccatgcatggtgctaggtcaagacttggtggtaagtctgagagtcagctcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gtcataccatgcatggtgctaggtcaagacttggtggtaagtctgagagccagctcccac 560

                                     
Query: 361 tctccatgacaccatctactctgaga 386
           ||||||||||||||||||||||||||
Sbjct: 561 tctccatgacaccatctactctgaga 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)