BAC Information

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BAC

Clone NameMSMg01-476C10
Chromosome11 (Build37)
Map Location 93,899,186 - 93,899,571
singlet/doubletsinglet
Overlap geneSpag9
Upstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, LOC100039431
Downstream geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C10.T7 (MSMg01no476_c10.b1)MSMg01-476C10.TJ (MSMg01no476_c10.g1)
ACCAG557810AG557811
length750761
length of high quality
(start - end)
439 (69 - 507)249 (69 - 317)
definitionCHROMAT_FILE: MSMg01no476_c10.b1 PHD_FILE: MSMg01no476_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:10 2005CHROMAT_FILE: MSMg01no476_c10.g1 PHD_FILE: MSMg01no476_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCCGCGG
AATTCTAGATTCCCCTGGTCTACAGAGGAATTCCAGGACAGCTAGGGCTA
CACAGAGAGAACCTGTCTTAAAAACCCAATCCAAAAAAACCAAACAAAGC
TAAAATTAGGTATAACATAAGACAGGATGAGAAGAGAGAAAATGGCCAAG
GGAGGTGGCACACACCTTTAATCCCAGAATTGGAGGCAGAGGTAAAATCA
TATTATACTCAAGGCCAGCCTGGTTTGCATAGTGTATTCCAGGCAAGCCA
GGGCTACAGAAAGAATGTTATGGAAGAGGGGAGGACTGTAAAATTAACTA
AGGTATGTGAATCCCAGACTGACCATAACACACAGGGACAAACGACACAT
TGACAAGACAGAAACAAATACAGTATGTTAAAGACTAACAGACTCTTAAA
AACAAGGGTTACAAAGGGATTATATGCTACAAATACTAATTTAAAATACT
AAAGAGGGCTGGAGAGTTGGCTCAGCAGTTAAAAAACCTGGACCTAGGTT
CAGTTGCCAGCATTCATGAGGAAGCTAACAACCATCTGTAATTCACTTCT
AGAGGAGCCGATGCCCTCTTCTGGCCTCTGTAGTCACGGCACTTTATATC
TGATAGGACTTTCCCACCCATAAATATACATCTTAAAGTTAATACCCACT
TCTCACACAACTAATATGCTGAAAATTGCCACTCTTTTAAACCCTTTTTA

CAATGAAGACGGTAGGCCTGGGGGNCGCCTTTTCATAAAATTTAGGTGAA
CTATAGAATGACTACAGGAATTCTCTGCCCCTAGTCAGCAGGAAGTAGTT
TAACAATAGGGTCACGCCCTTTCGTTTATTCTCTCCTATGTACTGTTAGG
AGGCTGAAAGGGTAGAGAAGTGTGGAACAAAGAACCCACAAAGTGGTGCA
TGCCTTTAATCCCAGCACTTGGGCGGCAAAGGCAGGCAGACTTCTGAGTT
TGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGGCTACAC
AGAGAAACCCTGTCTTTTTTTATCAACAGAAAAAAGAACAAAAAAAAAAA
ATACCAGTAAAAGATTTATCCTGGCTGCTATTGCTGGAATGTTCCCTGCT
TTGCTCCCAGACGGCATATTCTGTTTTTTCTTTTTCTTCTTATATTGCTT
CATAAAAGATTGGGACAATGATTGATCACTGGACCGTGCCCGCGCTAACG
GACGCACCTGACAAACTCATATATGGCTGATGTGTTAAAACTTAGTTCTT
TGCTCCTGCTTTTGATAATGTTTTACCACTTTTTTGCGTCCCCATTATTT
CTATCCGTGCTACGTCCTTACTCCCCATTTTTCCACCTCCCCCGTTTTTT
TTCTTCTTTTTCACCTTTATTTCCTGTACCTTCCTTTACATACCACTCCC
TTCTTTTCCCTCCCCCCTTTGTTTGTTTTTCGTCCCCCCCACTTTGTTCC
TTTTCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c10.b1 MSMg01no476_c10.b1 CHROMAT_FILE:
MSMg01no476_c10.b1 PHD_FILE: MSMg01no476_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:10 2005
         (439 letters)



>mm_chr11_93898733_93899571
          Length = 839

 Score =  692 bits (358), Expect = 0.0
 Identities = 379/386 (98%)
 Strand = Plus / Minus

                                                                       
Query: 54  aaacccaatccaaaaaaaccaaacaaagctaaaattaggtataacataagacaggatgag 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaacccaatccaaaaaaaccaaacaaagctaaaattaggtataacataagacaggatgag 780

                                                                       
Query: 114 aagagagaaaatggccaagggaggtggcacacacctttaatcccagaattggaggcagag 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aagagagaaaatggccaagggaggtggcacacacctttaatcccagaattggaggcagag 720

                                                                       
Query: 174 gtaaaatcatattatactcaaggccagcctggtttgcatagtgtattccaggcaagccag 233
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gtaaaatcatattattctcaaggccagcctggtttgcatagtgtattccaggcaagccag 660

                                                                       
Query: 234 ggctacagaaagaatgttatggaagaggggaggactgtaaaattaactaaggtatgtgaa 293
           ||||| |||||||| |  | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 659 ggctaaagaaagaaggagagggaagaggggaggactgtaaaattcactaaggtatgtgaa 600

                                                                       
Query: 294 tcccagactgaccataacacacagggacaaacgacacattgacaagacagaaacaaatac 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcccagactgaccataacacacagggacaaacgacacattgacaagacagaaacaaatac 540

                                                                       
Query: 354 agtatgttaaagactaacagactcttaaaaacaagggttacaaagggattatatgctaca 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtatgttaaagactaacagactcttaaaaacaagggttacaaagggattatatgctaca 480

                                     
Query: 414 aatactaatttaaaatactaaagagg 439
           ||||||||||||||||||||||||||
Sbjct: 479 aatactaatttaaaatactaaagagg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)