BAC Information

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BAC

Clone NameMSMg01-476O13
Chromosome11 (Build37)
Map Location 88,257,548 - 88,257,740
singlet/doubletsinglet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O13.T7 (MSMg01no476_o13.b1)MSMg01-476O13.TJ (MSMg01no476_o13.g1)
ACCAG558387AG558388
length749773
length of high quality
(start - end)
195 (121 - 315)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no476_o13.b1 PHD_FILE: MSMg01no476_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005CHROMAT_FILE: MSMg01no476_o13.g1 PHD_FILE: MSMg01no476_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCGGCCGCTAAAGGAATCCTAGTTCGTACCGATCCGCGGAANN
CACTCTTTTCGGGATGCGCACNNGCNGGGNGNGGNGGNNNGAAGGCTGGG
CCANAGGGAACGTCACCATTAGGAGGTGTGGCCTTGTTAGAGGAGGTGTG
GCCTTGTTGGAGGAAGTGTGTCACTGCCTATCCTCAGGCTCTGCCCAGTG
ATGAAGAGAGCCTCCTCCTGGCTGCCTTTTGGAAGACAGTTTCTTCCTTT
CTGCCTTTTGGAAGACAGTCTCTTCCTGGCTGCCTTTAAATCAAGATGTA
GAAGTCTTGGTTCTTTTTTTTTCANGNCNGCCTGCANGANGCAAGCACGG
NGATGATCATGCACTGAACCTGTAAGTCAGCTCCAATTAAATGTTGTCTT
TTATAAGAGTTGCCTTGGTCATAGTGTCTCTTCTCAGCAATGGAACCCCA
ACTAAGAACTGGGCGTCTCAGAATTATCACCTTCTATGGGCTGTTTCCTA
CAACAGATGCTAAGGGTCTCTGAGCATCTCTCTCGGTGCAATGCCGGTCC
CAGGCCAATAGGGCTTGTACCTTGCTATCCTAGATTGAATCCCATTCCCC
TCTTTTCATTTTTCACTCCCAACACTAAACCTGCCGACCATTCAAGTCTG
TTCTCTGTCTGTTTACTGATAGCTCTGCCGACGCCGTTCCTAGCTCATCA
TTGCTCTGCGGACAAAAATGTGCCTTCAGGGACATCAACACCCCCTGAC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAACCTCAGCTCAGCTCAGCTCATGCAGCTCA
GGGCCGAAATGAGATGAGTACTCAGCAGAACCGGGCTTGCTGGTGAGGCT
GCCACCGATCCGGTCGTGGCCAGCAGCTGTTTTATGAAACAATGAAAGAA
AAAGTGTTCGGCGGCACACCAAGGGCCTCGTAGAGCCAATTAGGAGTGTG
GCTTTCTCTGCCTGTCTGTGCGGCTGCTGAGGAGGCGACAGTGTTTAATA
GAAGAGGCATGCTCAGACTTATTCNTCCAGGATGCGCAGAAAAGGACCCG
AGGACCATTCTGATCGATACCCAGGAGGGAGGATGTCTCTCTGAGGACAC
TCGCATGGCACAGGGAGGTGTTGAGGACAAATGCTCATTCTTGTGGATGC
TTGGAAGGGTCTGTTCCATACAATCCATTCTGTCCCGCAGTCAAGCCGCT
GTGACATTTTCGTTCCCGCTTAATACATTGCTATCATCCCGTCGTAATAT
AATCCCCCATTATCGTAGGGAGTACCCCTACTAGCATGAATGCAATTCAC
CCCTCTCCCTTTGCACCTTGCCGATTATTACCTGCTGTATTCTTGGCTTT
GTAAATCCTTTTTTTTTTTTCCCCCCACCCTTCCCCCCTTGTTCCCCTCC
TCCCCCCCCTTTTTTTATTTTTTTATCTCTCCTCCTTTTCATCCCCTCCC
CTTACTCCCTTTTCCCTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o13.g1 MSMg01no476_o13.g1 CHROMAT_FILE:
MSMg01no476_o13.g1 PHD_FILE: MSMg01no476_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:10 2005
         (194 letters)



>mm_chr11_88257348_88257941
          Length = 594

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaccgggcttgctggtgaggctgccaccgatccggtcgtggccagcagctgttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagaaccgggcttgctggtgaggctgccaccgatccggtcgtggccagcagctgttttat 334

                                                                       
Query: 61  gaaacaatgaaagaaaaagtgttcggcggcacaccaagggcctcgtagagccaattagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaaacaatgaaagaaaaagtgttcggcggcacaccaagggcctcgtagagccaattagga 274

                                                                       
Query: 121 gtgtggctttctctgcctgtctgtgcggctgctgaggaggcgacagtgtttaatagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtgtggctttctctgcctgtctgtgcggctgctgaggaggcgacagtgtttaatagaaga 214

                        
Query: 181 ggcatgctcagac 193
           |||||||||||||
Sbjct: 213 ggcatgctcagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)