BAC Information

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BAC

Clone NameMSMg01-478A05
Chromosome11 (Build37)12 (Build37)
Map Location 103,654,132 - 103,654,78043,166,632 - 43,167,259
singlet/doubletsingletsinglet
Overlap geneWnt3
Upstream geneGja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b
Downstream geneNsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A05.T7 (MSMg01no478_a05.b1)MSMg01-478A05.TJ (MSMg01no478_a05.g1)
ACCAG559229AG559230
length741739
length of high quality
(start - end)		655 (62 - 716)627 (62 - 688)
definitionCHROMAT_FILE: MSMg01no478_a05.b1 PHD_FILE: MSMg01no478_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005CHROMAT_FILE: MSMg01no478_a05.g1 PHD_FILE: MSMg01no478_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:37 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(103,654,132 - 103,654,780)(43,166,632 - 43,167,259)
sequence
XXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGGGCCGCGGAATTCTGCCAT
TCCCGAAAATTAGCGGAGAGTGGATGGAGGCCGTTAGACACAATGGCAGC
AGCATAGGACGCGAGATGAAGCCATTCAGACCCCTGTACCTTCTGAGTCT
GCCTTCTCGTTGGTGCAGTGCATTAGCCTGAACCCCTTGGAGCTTTTGAA
AGAATAAATCTCAATGAGAAGGTTCTGGAAAACAGCTTTGCAGTCTCAAA
GGTGGCCAGCTCCCCTGAGAAGCCCACATCCACACTGGTTCCGAGAACCC
TCACCTTTTTTTTTTGCTATCTTGGAAGAGGCCCAGTCACCTAGACTTCT
CTGTGGTTATTTGAACCCATGTGTCAACCCTTCTGATTCTGGGACAGAGC
TCTTTTGTCTCTTGAGGATGCCTGGGACATGGCCCTGCTTTGATACAGAG
ACATAAACATCAAGGGTAGGAGATCCACATCAACATTCAAGAGAGAAAAT
ACCAGTAAGAAGGAAGGCTCCAGTGTGAGTCCAGCACTCAGCCTGAACAA
CAAGACAGGCTGGGTGTCTCAGCTCTCCACTGACACACTGTAGAGTCTCC
CACCCCAAGAAGTCCCTTCTTGCTTTCTTAGCAGCCTCAGTATCTCCATC
ACCAGCTGTATGATCCCAAACATATTACCCGGCCTCTAGAACCTGTGTCA
TCACCTGTCAAGTGGGGATAATAATGTCGTTGGGTTCCTTG

GGAGGCCTGGCGGCCGCCTGGTCTAAAAGGGAGGTGAACTATAGAATTTC
CTAAAAAATTCTTGGAAAGAGAGGTAACTCTTGAGCAAATATAATTTTTG
CTTAGTTCTGAGTCCTTCCTTTGTGTCTTAGAGACACTCATTACAGTGAA
GATATTGATAGTGTGAATGGTTCTGACTTACTGACTTACCAGTTACTAAA
AACTGGTCCCTATCTTGACCACCCTAGCATAGGAAATACCCCTGTAGCTC
CCTTTTATCCCTGTCGGTGTGTACACCCTTTTGTTTGCTGTTCCCTGGGC
CTGTTGATTGCTTCTCAGGACTGATTAGGCTGCACCCCCTACCCCTAGTA
TCTCCCTTTTAGAGTATTTCAAGGTCTTCAGGTTTGCTCCCAGGAAGAGG
TACCCATTCCATCCCAGAGACTTTCCTCTAAGAGGATTCCTCCAACTTTA
CTTTTCCTTTTAGGGAGTAATCTTATTGAATATCTCATGTATTCTCATAG
ATATCATGTCTTATTTTTACATGTTGCATACATTTTAAATGACATTATAT
ATTTGTAAGGGGACCCAAGAGTACTTTAGAGAAAAGTGCTGAAGAGGACA
TAAGGGAACGGATATGAGGAGGCTATGTCAAACATTCCTCCTTAACCCTG
AAGTCCTGCTACATGCTAAAAGTCTTACTTTCAGCCTTGGCAGGACAGGG
TACACCTGTCTTGTTTCCTGTGTGAGACTTTTACTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a05.b1 MSMg01no478_a05.b1 CHROMAT_FILE:
MSMg01no478_a05.b1 PHD_FILE: MSMg01no478_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:37 2005
         (655 letters)



>mm_chr11_103653932_103654980
          Length = 1049

 Score = 1170 bits (605), Expect = 0.0
 Identities = 640/659 (97%), Gaps = 14/659 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcggagagtggatggaggccgttagacacaatggcagcagcataggacgcgagatgaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agcggagagtggatggaggccgttagacacaatggcagcagcataggaggcgagatgaag 260

                                                                       
Query: 61  ccattcagacccctgtaccttctgagtctgccttctcgttggtgcagtgcattagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattcagacccctgtaccttctgagtctgccttctcgttggtgcagtgcattagcctga 320

                                                                       
Query: 121 accccttggagcttttgaaagaataaatctcaatgagaaggttctggaaaacagctttgc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 accccttggagcttttgaaagaataaatctcaatgagcaggttctggaaaacagctttgc 380

                                                                       
Query: 181 agtctcaaaggtggccagctcccctgagaagcccacatccacactggttccgagaaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctcaaaggtggccagctcccctgagaagcccacatccacactggttccgagaaccct 440

                                                                       
Query: 241 cacctttt----ttttttgctatcttggaagaggcccagtcacctagacttctctgtggt 296
           |||||| |    ||    |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 caccttctgggctt----gctatcttggaagaggcccagtcacctagaattctctgtggt 496

                                                                       
Query: 297 tatttgaacccatgtgtcaacccttctgattctgggacagagctcttttgtctcttgagg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatttgaacccatgtgtcaacccttctgattctgggacagagctcttttgtctcttgagg 556

                                                                       
Query: 357 atgcctgggacatggccctgctttgatacagagacataaacatcaagggtaggagatcca 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 557 atgcctgggacatggccctgctttgatacagagacataaacatcaagggtaggaaatcca 616

                                                                       
Query: 417 catcaacattcaagagagaaaataccagtaagaaggaaggctccagtgtgagtccagcac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catcaacattcaagagagaaaataccagtaagaaggaaggctccagtgtgagtccagcac 676

                                                                       
Query: 477 tcagcctgaacaacaagacaggctgggtgtctcagctctccactgacacactgtagagtc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcagcctgaacaacaagacaggctgggtgtctcagctctccactgacacactgtagagtc 736

                                                                       
Query: 537 tcccaccccaagaagtcccttcttgctttcttagcagcctcagtatctccatcaccagct 596
           ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||
Sbjct: 737 tcccaccccaagaagtcccttcttgctttcttagcagcctca------ccatcaccagct 790

                                                                      
Query: 597 gtatgatcccaaacatattacccggcctctagaacctgtgtcatcacctgtcaagtggg 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gtatgatcccaaacatattacccggcctctagaacctgtgtcatcacctgtcaagtggg 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1049
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1039
Effective search space:   670155
Effective search space used:   670155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_a05.g1 MSMg01no478_a05.g1 CHROMAT_FILE:
MSMg01no478_a05.g1 PHD_FILE: MSMg01no478_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:37 2005
         (627 letters)



>mm_chr12_43166432_43167458
          Length = 1027

 Score =  911 bits (471), Expect = 0.0
 Identities = 591/639 (92%), Gaps = 23/639 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaaagagaggtaactcttgagcaaatataatttttgcttagttctgagtccttcctt 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 201 ttggaaagagaggtagttcttgagcaaatataatttttgcttagttctgagcccttactt 260

                                                                       
Query: 61  tgtgtcttagagacactcattacagtgaagatattgatagtgtgaatggttctgacttac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctcttagagacactcattacagtgaagatattgatagtgtgaatggttctgacttac 320

                                                                       
Query: 121 -tgacttaccagttactaaaaactggtccctatcttgaccaccctagcataggaaatacc 179
            ||   |  | |   ||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 321 atg---t--c-g---ctaaaaactggcccctatcttgaccaccctagcatgggaaatgcc 371

                                                                       
Query: 180 cctgtagctcccttttatccctgtcggtgtgtacacccttttgtttgctgttccctgggc 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 372 cctgtagctcccttttatccctgtcggtgtgtacaccgttttgtttgctgttccctgggc 431

                                                                       
Query: 240 ctgttgattgcttctcaggactgattaggctgcaccccctacccctagtatctccctttt 299
           ||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 432 ctgctgagtgcttctcaggactgattaggctgcattccctacccctagtatctccctttt 491

                                                                       
Query: 300 agagtatttcaaggtcttcaggtttgctcccaggaagag-gtacccattccatcccagag 358
           ||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 492 agagtatttcatggtcttcaggtttgttcccaggaag-gtgtacccattccatcccagag 550

                                                                       
Query: 359 a--------ctttcctctaag-aggattcctccaactttacttttccttt-tagggagta 408
           |        |||||||||||| ||| ||||||||||||||||||| |||| |||||||||
Sbjct: 551 actattatcctttcctctaagaagg-ttcctccaactttactttttctttgtagggagta 609

                                                                       
Query: 409 atcttattgaatatctcatgtattctcatagatatcatgtcttatttttacatgttgcat 468
           ||||||||||||| ||||||||| | |||| |||| ||||||||||||||||| ||||||
Sbjct: 610 atcttattgaatagctcatgtatccacataaatataatgtcttatttttacatattgcat 669

                                                                       
Query: 469 acattttaaatgacattatatatttgtaaggggacccaagagtactttagagaaaagtgc 528
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 670 acattttaattgacattatatatttgtaaggggacccaagagtactttagaaaaaagtgc 729

                                                                       
Query: 529 tgaagaggacataagggaacggatatgaggaggctatgtcaaacattcctccttaaccct 588
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 730 tgaagaggacataagggaacggatatgaggaggctatgtcaaacattcctccttaatcct 789

                                                  
Query: 589 gaagtcctgctacatgctaaaagtcttactttcagcctt 627
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaagtcctgctacatgctaaaagtcttactttcagcctt 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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