Query= MSMg01no478_a16.b1 MSMg01no478_a16.b1 CHROMAT_FILE:
MSMg01no478_a16.b1 PHD_FILE: MSMg01no478_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:39 2005
(468 letters)
>mm_chr11_112159368_112160236
Length = 869
Score = 754 bits (390), Expect = 0.0
Identities = 444/472 (94%), Gaps = 22/472 (4%)
Strand = Plus / Minus
Query: 1 ttggcttttctatttttccagttattgaacaagtcctgcttttcttttcctcagaaagta 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 568 ttggcttttctatttttccagttattgaacaagtcctgctttttttttcctcagaaagta 509
Query: 61 aaacattacccataatataacagatacgct-gcagctcttcatgctgttttaccttc-tt 118
|||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct: 508 aaacattacccataatataacagatacg-tggcagctcttcatgc-----------catt 461
Query: 119 tggcaaagtggtgatgagctttctac-ttaaaaaaataagccatagatttattattcaga 177
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 460 tggcaaagtggtgatgagctttctactttaaaaaaataagccatagatttattattttga 401
Query: 178 ctagatcacagtcaacatgtctgtggatattataaacttgtgccacaatatcagcgttga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctagatcacagtcaacatgtctgtggatattataaacttgtgccacaatatcagcgttga 341
Query: 238 cttatttattattaaattatccatggggttattgaaatggctcagcagcaaaggtgctta 297
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cttatttaagatgaaattatccatggggttattgaaatggctcagcagcaaaggtgctta 281
Query: 298 -ctctgaaactgaagacctgagtttcattcaaagaccgatacaatggaaggaaagaactg 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cctctgaaactgaagacctgagtttcattcaaagaccgatacaatggaaggaaagaactg 221
Query: 357 actcctgcaagctgtcctctgtcttccacaggcaagcaatgccatgtatataaacacacg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 actcctgcaagctgtcctctgtcttccacaggcaagcaatgccatgtatataaacacacg 161
Query: 417 cacacgcacacacacacgcacacacaggcatgcacacacacacacacacaca 468
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 cacacg------cacacgcacacacaggcatgcacacacacacacacacaca 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_a16.g1 MSMg01no478_a16.g1 CHROMAT_FILE:
MSMg01no478_a16.g1 PHD_FILE: MSMg01no478_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:39 2005
(646 letters)
>mm_chr11_111976081_111977126
Length = 1046
Score = 1158 bits (599), Expect = 0.0
Identities = 635/647 (98%), Gaps = 2/647 (0%)
Strand = Plus / Plus
Query: 1 gataagaatatagatgagttccaagccagccttaactgaggagtgagatgctgcttaaaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 gataagaatatagatgagttccaggccagccttaactgaggagtgagatgctgcttaaaa 260
Query: 61 taaatagagaaatgaatgaataaataaatgatagaaaaaa-taatttttaaaaaaatttc 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 261 taaatagagaaatgaatgaataaataaatgatagaaaaaaataatttttaaaaaattttc 320
Query: 120 cccttttttaaaaattaggtattttcttcatttacatttccaatgctatcccaaaagtcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttttttaaaaattaggtattttcttcatttacatttccaatgctatcccaaaagtcc 380
Query: 180 cccatgccctcccccccccaactcctctacccacccactcccacttcttggccctggcgt 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatgcccttccccccccaactcctctacccacccactcccacttcttggccctggcgt 440
Query: 240 tcccctgtactgaggcatataaagtttgcaagaccaatgagcctcactttccactgatgg 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tcccctgtactgaggcatataaagtttgcaagaccaatgagcctcgctttccactgatgg 500
Query: 300 gctactaggccatcttctgttacatatgcagctagagacacgaggaaaaaaaaaaaaagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gctactaggccatcttctgttacatatgcagctagagacacgaggaaaaaaaaaaaa-gg 559
Query: 360 aaaactaaatttagttcgagagccagatgttaggtaaatataattataaaaggagaccat 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaactaaatttagttcgagagccagatgttaggtaaatataattataaaaggagaccac 619
Query: 420 acctaggacagagagaaaggaatgttctagaaatcaaaaaagataatataagaagcatct 479
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 acctaggacagagagaagggaatgttctagaaaacaaaaaagataatataagaagcatct 679
Query: 480 tagaaggtagaggtaatggaggacaagggatgtgggagctgaaactggaaccatgccatt 539
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 680 tagaaggtagaggtaatggaggacaagggatatggaagctgaaactggaaccatgccatt 739
Query: 540 acctctttacaaattaaattcgaggaagccaacagtaagtagaagactctattgccttga 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 acctctttacaaattaaattcgaggaagccaacagtaagtagatgactctattgccttga 799
Query: 600 tctcctcccacgaaagccaaagcacagatgattgtccacccagcaaa 646
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctcctcccacgaaagccaaagcacagatgattgtccacccagcaaa 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
