Query= MSMg01no478_b09.b1 MSMg01no478_b09.b1 CHROMAT_FILE:
MSMg01no478_b09.b1 PHD_FILE: MSMg01no478_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:43 2005
(229 letters)
>mm_chr11_93670948_93671575
Length = 628
Score = 279 bits (144), Expect = 1e-79
Identities = 218/272 (80%), Gaps = 49/272 (18%)
Strand = Plus / Plus
Query: 1 ccccttcctctcttgtgatcaaaggccctctcagtgctgtttagagaaaacagcaattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccttcctctcttgtgatcaaaggccctctcagtgctgtttagagaaaacagcaattgc 260
Query: 61 tcactgctgctatgccttagggaaaaggctcatgaggctagtaactttctgagcttcttg 120
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 261 tcactgctgctatgccttagagaaaaggctcctgaggcta-taactttctgagcttcttg 319
Query: 121 tatcttttttgtt-tttgtgagttgttgttgttgt--tg--------------------- 156
||||||||||||| ||| |||||||||||||| || ||
Sbjct: 320 tatcttttttgttcttt-tgagttgttgttgtggtggtggtggtggtggtgggtggtggt 378
Query: 157 -----------------------tagtggtggtggtggtagcagtggtgtgcatgagtgt 193
| ||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtggtggtggtggtggtggtggtggtggtggtggtggtagcagtggtgtgcatgagtgc 438
Query: 194 gtgtgttgtgtgtgtgtattttgagatggagt 225
||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtgttgtgtgtgtgtattttgagatggagt 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 628
Length adjustment: 9
Effective length of query: 220
Effective length of database: 619
Effective search space: 136180
Effective search space used: 136180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_b09.g1 MSMg01no478_b09.g1 CHROMAT_FILE:
MSMg01no478_b09.g1 PHD_FILE: MSMg01no478_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:43 2005
(654 letters)
>mm_chr11_93814559_93815611
Length = 1053
Score = 1195 bits (618), Expect = 0.0
Identities = 644/654 (98%), Gaps = 4/654 (0%)
Strand = Plus / Minus
Query: 1 caggccaaccatggctgtacagactcttgtctcaaaaacaagacagagaaagcgttcttg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 810 caggccaaccatggctgtacagactc---tctcaaaaacaagacagagaaagcgttcttg 754
Query: 61 gggttggagagaggactcagcagttgagtatttattgttgagatcaggagtttggttccc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 753 gggttggagagaggactcagcagttgagtatttattgctgagatcaggagtttggttccc 694
Query: 121 agtacttagggtggctcacagccctctctaatttcagttccaggggacctgacgtcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agtacttagggtggctcacagccctctctaatttcagttccaggggacctgacgtcttct 634
Query: 181 ggcctctgggcaccaggcacaaatgcaggcaaaccacccatacacataaatctttaaatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 633 ggcctctgggcaccaggcacaaatgcaggcaaaccacccatacacataaatccttaaatc 574
Query: 241 taaagtttgtcatctgaaatgtttaaaaggttctgttgagcaggggaacctgggttcctg 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 573 taaagtttgtcatctgaaatgtttaaaaggttctgttgagca-gggaacctgggttactg 515
Query: 301 acacattcagtcaatattgcactttccacttctatagtgttagatccttaacatcactga 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acacattcagtcaatattgtactttccacttctatagtgttagatccttaacatcactga 455
Query: 361 ctatgtaagagtctttatttcttttggtttttctagactgggtttctctgtagccctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctatgtaagagtctttatttcttttggtttttctagactgggtttctctgtagccctggc 395
Query: 421 tttcttggaacttgctctatagaccaagctatccttgaaatcagatccatctatctctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttcttggaacttgctctatagaccaagctatccttgaaatcagatccatctatctctgc 335
Query: 481 cttccaagtgctgggatcaaaggggtgcgccaccactggctcttattttttaagacaagg 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 334 cttccaagtgctgggatcaaaggggtgcaccaccactggctcttattttttaagacaagg 275
Query: 541 tttctatcccaggttggccttgaacttggggttaccccctctgtctaccaagtgctggga 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 274 tttctatcccaggttggccttgaacttggggttaccccctttgtctaccaagtgctggga 215
Query: 601 ttgcaggcatgagctatcagctcattttgtaaacacttgcaatttttgtcttgt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttgcaggcatgagctatcagctcattttgtaaacacttgcaatttttgtcttgt 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
