BAC Information

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BAC

Clone NameMSMg01-478P07
Chromosome11 (Build37)
Map Location 79,263,790 - 79,264,205
singlet/doubletsinglet
Overlap geneNf1
Upstream geneSlc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
Downstream geneOmg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478P07.T7 (MSMg01no478_p07.b1)MSMg01-478P07.TJ (MSMg01no478_p07.g1)
ACCAG559949AG559950
length734719
length of high quality
(start - end)
413 (322 - 734)638 (65 - 702)
definitionCHROMAT_FILE: MSMg01no478_p07.b1 PHD_FILE: MSMg01no478_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:47 2005CHROMAT_FILE: MSMg01no478_p07.g1 PHD_FILE: MSMg01no478_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGAGGATCCGCGGAATTC
CAGGTTCCCTAAGCTACACCAGAGATCCTATCTCCAAAAAAGTAAATACG
TAAGAGGTATTTTTAAGTCAAGCCAGGAATGGTAGCGCATGCTTTTAACC
CTAGTACTCAGGAGTCAGAGGCAGGCAGAGATCTCTTTGAGTTCAAGGCC
AGCCTGGTCTACACATCAAGTACAAGACAGCCAGCACTATTACACAAAGA
AACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAG
AAAAAAGAAGAATTTTATTATGAAAAAGAAAAAGAAGAAGAAAAAGAGGT
ATTTTAAGTCATGTGCTATAAAGCTTAGAAATATTAGTCAGAGCTTCACA
GACTTACATCAACAGTTGTTTTCTTGTGTTAGGAGGGATCAAGAATAGGG
TCTCATGCGTGCTAGACCAGAACTCTACCACTAGGTTGCATCATCAGACC
TTCACTCTTCATTAAGAAAACTACTAAATGACCTTTAATTACAGTTAAAT
GCTAAAAAGTTCATAATATTTACTGATAATACATTTGAAGATGTGTGAAA
AATTTTAGGTTTGAAGAAAATAATTTAGGAGTACTCTAATAAATGGGCAT
AAAAGTACAATTGTAAGTGAGTCAGCTGTGGAGATGCATGCCTGTGCCCC
AGCATTTGGAAACCAGAGGCAGAAGGATCTCTAG
ACTGTGGGAGGCCTGGCGGCCGCCTGTCAAACAAATGTAGGTGACCTATA
GATCCTCCACGGAATTCACTGTTAGACCAGGCTAGCCTTGAACTCACAAA
GGTCTGCCTGGCTCTGCCTCCTGAGTGCTGGGACTAAAGGTGTGCACCAC
CATACCTAGCACTTGTTATTTTTAATGATGTTTTTATTACAGTGGTTTTT
GGATTTATTTTGTATTTTCTATTTTTATTATGTATGTGTTTTGCCTGCAT
GTAAGTATATCATGTGTGTACCTGCTGCCTGAGGAGTTCAGACAAGTGCC
AGATCCTCTTGATCTGAAGTCACAGATGGTTTATTTTGTTTTTGTTTGAG
ACAGGATCTCGTGTAGCTAGGGCTGAATTTGAACTGCTGATTCTCCTGCC
TCCATCCTCCAAATTCTGGGACCACAGGTGTTCACCCCCATGCCTGACTA
TGGATCTTATGTGTATTAAAATCTGAGCATAGTTGGGTAATGTAGTACAT
GCCTGTAATGTCAGCACAAATAAATATATAAAAAAGGAAAAGAAGTATAA
TTAAGAAAAAAATAATAAAAATCCAGTTTCTTGCTCACAGCACCCACATT
GTAAGTGCTCACTGGTCACCATGGTTGGTGGCCACATTATTGGACAGCTA
GGGTATAAGACCCCAGGAAATCACAGGAAATGCTTTGAGGATGGCTCTGG
TCCAAAAAGCCATCTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_p07.b1 MSMg01no478_p07.b1 CHROMAT_FILE:
MSMg01no478_p07.b1 PHD_FILE: MSMg01no478_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:47 2005
         (413 letters)



>mm_chr11_79263476_79264288
          Length = 813

 Score =  760 bits (393), Expect = 0.0
 Identities = 410/417 (98%), Gaps = 5/417 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaagaaa---aagaagaagaaaaagaggtattttaagtcatgtgctataaagcttag 57
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaaaaagaaaaagaagaagaagaaaaagaggtattttaagtcatgtgctataaagcttag 671

                                                                       
Query: 58  aaatattagtcagagcttcacagacttacatcaacagttgttttcttgtgttaggaggga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaatattagtcagagcttcacagacttacatcaacagttgttttcttgtgttaggaggga 611

                                                                       
Query: 118 tcaagaatagggtctcatgcgtgctagaccagaactctaccactaggttgcatcatcaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tcaagaatagggtctcatgcgtgctagaccagaactctaccactaggttgcatcatcaga 551

                                                                       
Query: 178 ccttcactcttcattaagaaaactactaaatgacctttaattacagttaaatgctaaaaa 237
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 ccttcactcttcattaagaaaactactaaatgacttttaattacagttaaatgctaaaaa 491

                                                                       
Query: 238 gttcataatatttactgataatacatttgaagatgtgtgaaaaattttaggtttgaagaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttcataatatttactgataatacatttgaagatgtgtgaaaaattttaggtttgaagaa 431

                                                                       
Query: 298 aataatttaggagtactctaataaatgggcataaaagtacaattgtaagtgagtcagctg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aataatttaggagtactctaataaatgggcataaaagtacaattgtaagtgagtcagctg 371

                                                                    
Query: 358 tggagatgcatgcctgtg-ccccagcatttggaaaccagaggcagaaggatctctag 413
           ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 370 tggagatgc-tgcctgtgcccccagcatttggaaaacagaggcagaaggatctctag 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)