BAC Information

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BAC

Clone NameMSMg01-479A11
Chromosome11 (Build37)
Map Location 65,281,319 - 65,281,976
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479A11.T7 (MSMg01no479_a11.b1)MSMg01-479A11.TJ (MSMg01no479_a11.g1)
ACCAG560005AG560006
length747747
length of high quality
(start - end)
660 (74 - 733)100 (121 - 220)
definitionCHROMAT_FILE: MSMg01no479_a11.b1 PHD_FILE: MSMg01no479_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:52 2005CHROMAT_FILE: MSMg01no479_a11.g1 PHD_FILE: MSMg01no479_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTACTCCCGTTAGACCATGCTAAACATGTTAGTGCATTCTAC
ATTATTACAATATGATATGGGAGGCAGTTACCTCTACAAAGGAGATAGTA
GAGCACGTGGTTCAGGATGTTCAAAGTCCAATAAGCATGGTACCACTTCT
GAGAGCATCCTCCCTTGGCTGTCATCTGATGGTCCATGTGGAGGTATCAT
GTGTGTCTTAGTCAGGGTTTCTATTCCTGCACGAAACATCGTGACCAAGA
AGCAGGTTGGGGAGGAATTGTTTTATTACACTTTCACATTGCTGTTCATC
ACCGAAACAAATCAGAACAGGAACTCATGCAGGTTGGAACTTGGAAGCAG
GAGCTGGTGCGGAAGCCATGGAGGAGTGCTGCCTACTAGCTTGCTTCCCC
TGGCTTGCTCAGCCTGCTTGCTTATTGAGCCCAAGACTACCAGCCCAAGG
AAGGCACCACCCACAATTGGCCCTCCCACAGTTCATCTCTAATTGAAATA
ATGCCTTACAGATGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTT
TCTCTGTGGTAAATTCAGCTTGTGTCAAGTGGACACACAAAACAATCCAG
TATAATGTGGTATCCTGAACTTTGGGAAGGAGATGTCTGGGACCCTCATC
ATAAGAAACATCTGTTGACAACTAATGAGATTCCATGAAACATGCCT
CCAATGCAGTGGGAGGGAAGGAGGAGGCCGGTTGCTCACCTCGGGNGNGA
ACNANAGATTTACANGCACCGACCATANACCANNNNGAATGGCAACGTTC
TTATACAGCTTGGTTCCCCCAACCTTGACTAGGGGAGACAAGGGAATGAA
TTATGGACACACACACACACACACACACACACACACATACACACACACAC
ACACACACAGATTCAGAGAAGTTGGGGTCACATGGCCCGGGCTCTTTTCT
TGAGAAGACTCAGCACTCTAGAGTCTCACCATGTTTACTGCATAAAGCTG
AACAAGAAGGTTTTTTTTTATTCACACAGCCGAACAAGGAAGAGGCAGGG
CAAATATTGCCCCCCCCACAGGGGGCGCAGCCCCAGAGACAAACGCCGGG
GNGGGCGGAGAACCCTTTTTTGGATATTGTCTGTACTCACTGTCAATATC
TATACATACGTTAGACGAAGGCTTGGTCGTCCCTCTGGGCCTTATCGCTG
GGGTCAGGGAAGCTCTGGCATTCACCTGAGGCATTAGATCCCTTGCATGG
CAACGCTCTTGTGAATAATACACACTCACTCAGGACTTTATCCATATTCA
CTCAAGGATCCCTCAGCTTCCCACACCATAGCAACAAAAGATTCTCTTTT
TTTTTATACACACAAACACACCCCCACACCACAAGATTACCAACACCACC
CCCCCTTTGTAACACCCCATTAACCCGTCAAGCCATTTCCTGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_a11.b1 MSMg01no479_a11.b1 CHROMAT_FILE:
MSMg01no479_a11.b1 PHD_FILE: MSMg01no479_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:52 2005
         (660 letters)



>mm_chr11_65281119_65282178
          Length = 1060

 Score = 1234 bits (638), Expect = 0.0
 Identities = 654/660 (99%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctaaacatgttagtgcattctacattattacaatatgatatgggaggcagttacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctaaacatgttagtgcattctacattattacaatatgatatgggaggcagttacct 260

                                                                       
Query: 61  ctacaaaggagatagtagagcacgtggttcaggatgttcaaagtccaataagcatggtac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctacaaaggagatagtagagcacgtggttcaggacgttcaaagtccaataagcatggtac 320

                                                                       
Query: 121 cacttctgagagcatcctcccttggctgtcatctgatggtccatgtggaggtatcatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttctgagagcatcctcccttggctgtcatctgatggtccatgtggaggtatcatgtg 380

                                                                       
Query: 181 tgtcttagtcagggtttctattcctgcacgaaacatcgtgaccaagaagcaggttgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttagtcagggtttctattcctgcacgaaacatcgtgaccaagaagcaggttgggga 440

                                                                       
Query: 241 ggaattgttttattacactttcacattgctgttcatcaccgaaacaaatcagaacaggaa 300
           ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaagggtttattacactttcacattgctgttcatcaccgaaacaaatcagaacaggaa 500

                                                                       
Query: 301 ctcatgcaggttggaacttggaagcaggagctggtgcggaagccatggaggagtgctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcatgcaggttggaacttggaagcaggagctggtgcggaagccatggaggagtgctgcc 560

                                                                       
Query: 361 tactagcttgcttcccctggcttgctcagcctgcttgcttattgagcccaagactaccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactagcttgcttcccctggcttgctcagcctgcttgcttattgagcccaagactaccag 620

                                                                       
Query: 421 cccaaggaaggcaccacccacaattggccctcccacagttcatctctaattgaaataatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 621 cccaaggaaggcaccacccacaattggccctcccacagttcatctctaattgaaat--tg 678

                                                                       
Query: 481 ccttacagatggatctcatggaggcatttcctcaagggaggctcctttctctgtggtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccttacagatggatctcatggaggcatttcctcaagggaggctcctttctctgtggtaaa 738

                                                                       
Query: 541 ttcagcttgtgtcaagtggacacacaaaacaatccagtataatgtggtatcctgaacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttcagcttgtgtcaagtggacacacaaaacaatccagtataatgtggtatcctgaacttt 798

                                                                       
Query: 601 gggaaggagatgtctgggaccctcatcataagaaacatctgttgacaactaatgagattc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gggaaggagatgtctgggaccctcatcataagaaacatctgttgacaactaatgagattc 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)