Query= MSMg01no480_a21.b1 MSMg01no480_a21.b1 CHROMAT_FILE:
MSMg01no480_a21.b1 PHD_FILE: MSMg01no480_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:15 2005
(572 letters)
>mm_chr11_16060223_16061194
Length = 972
Score = 905 bits (468), Expect = 0.0
Identities = 541/568 (95%), Gaps = 10/568 (1%)
Strand = Plus / Plus
Query: 5 gaattccttgtatgtgccctgcatagttaaaattaactcctctccctctccttctccctc 64
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattccttgtatgtgaccttcatagttaaaattaactcctctccctctccttctccctc 274
Query: 65 ttcctctccctcttcctctccctcttcctctccctcttcccttcctccctcccccccctc 124
|||||||||||||||||||||||||||| || || |||| |||||||| ||||||||
Sbjct: 275 ttcctctccctcttcctctccctcttcc-ct---tcctccc-tcctccct--cccccctc 327
Query: 125 tgctgtagctgcttgtattctgaatgctaattatgtagtcaccatatgaaggagccagga 184
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 328 tcctgtagctgcttgtattctgaatgctaatta--cagtcaccatatgaaggagccagga 385
Query: 185 cagcattgcccagaggaatgcccaactgggtatagggctgtcaagatagaacatagaatt 244
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 cagcattgcccagaggaatgcccaactgggtctagggctgtcaagatagaacatagaatt 445
Query: 245 agtaaaggataactcagtattagcctggagtgtattgctatcttgctgtttaaggaatat 304
||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 446 agtaagggataactcagtattagcctggagggta-ggctatcttgctgcttaaggaatat 504
Query: 305 taaaatataaaggctgtatgtgtgtctttcattcggaaacataaaccattggggcaggta 364
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 taaaatacaaaggctgtatgtgtgtctttcattcgggaacataaaccattggggcaggta 564
Query: 365 gcaatctcatgccaggattaattaataattatgttaaactctcttcttatctttttccta 424
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 gcaatctcatgccaggattaattaataattatgttaaactctcttgttatctttttccta 624
Query: 425 gttctgttccactggggactgaatctcatttactcttctaggacttcagttgtcatgttg 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 gttctgttccactggggactgaatctcatttactcttataggacttcagttgtcatgttg 684
Query: 485 tcacatccaagctttggggacatcaagatccagcagaaactcagctctatcaatagctat 544
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 685 tcacatccaagctttggggacatcaagatccagcagaatctcaactctatcaatagctat 744
Query: 545 gtcaagacaatagcttatattttagaga 572
|||||||||||||||||||||| |||||
Sbjct: 745 gtcaagacaatagcttatatttcagaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_a21.g1 MSMg01no480_a21.g1 CHROMAT_FILE:
MSMg01no480_a21.g1 PHD_FILE: MSMg01no480_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:15 2005
(547 letters)
>mm_chr11_16261939_16262885
Length = 947
Score = 1050 bits (543), Expect = 0.0
Identities = 546/547 (99%)
Strand = Plus / Minus
Query: 1 agatgtcttatttcacataccatattctggcacaattgtataaccacatcatgccactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agatgtcttatttcacataccatattctggcacaattgtataaccacatcatgccactgc 688
Query: 61 tgtttttctttcattttcatacaactaagctgaagatcttaccagtatttaatttttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtttttctttcattttcatacaactaagctgaagatcttaccagtatttaatttttaca 628
Query: 121 gaaatgagaggagaaattgatagacaagaagtttagagtaaaggttacttcatccactga 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaaacgagaggagaaattgatagacaagaagtttagagtaaaggttacttcatccactga 568
Query: 181 tctacaatttaaagatggcatgacatttctgaaacaaagatcagattattatccttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctacaatttaaagatggcatgacatttctgaaacaaagatcagattattatccttttaa 508
Query: 241 cttgcctcttgtcctggatagtaagtatgagtgagtttattctgcacctgttttctaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cttgcctcttgtcctggatagtaagtatgagtgagtttattctgcacctgttttctaata 448
Query: 301 tggactttgatcatactttgcataaggtaataataaagttacatcaataaaaagccatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggactttgatcatactttgcataaggtaataataaagttacatcaataaaaagccatgc 388
Query: 361 aaaggtgttgtatagatgaaaaaatatttttctgttttttgatttgatcttctttaatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaggtgttgtatagatgaaaaaatatttttctgttttttgatttgatcttctttaatat 328
Query: 421 ttcagttgtgtgacattccacaggaactcagagtctgtttctactgtgaaaataaaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcagttgtgtgacattccacaggaactcagagtctgtttctactgtgaaaataaaaaaa 268
Query: 481 tccattgcttttgtatgaggcagtttgcttttatatattttattaagagaataaacttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tccattgcttttgtatgaggcagtttgcttttatatattttattaagagaataaacttga 208
Query: 541 agtgtta 547
|||||||
Sbjct: 207 agtgtta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
