BAC Information

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BAC

Clone NameMSMg01-480P07
Chromosome11 (Build37)
Map Location 3,093,581 - 3,093,847
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC236604, Sfi1, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480P07.T7 (MSMg01no480_p07.b1)MSMg01-480P07.TJ (MSMg01no480_p07.g1)
ACCAG561474AG561475
length726724
length of high quality
(start - end)
559 (76 - 634)267 (327 - 593)
definitionCHROMAT_FILE: MSMg01no480_p07.b1 PHD_FILE: MSMg01no480_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:25 2005CHROMAT_FILE: MSMg01no480_p07.g1 PHD_FILE: MSMg01no480_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAGAGGAGCCGCG
GAATTCAGGGGATAACAAAGCGTAGAAAAATTTGAACGTCATGTCGAGCT
GGTATCGGCTTCTGGAATACCGAAAGGATCTCCCATCTCGGCTCCATTGT
TTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGA
GCCTCATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTC
CGTCCTGTCCTGTGGAAACACAAACAGACCCTCTCGCCCACGTCAACACC
AGATCTGGTCGATCCCCTTTTTAGATGGACACAATACCTCGTGGTGATGA
GACCATAACCTCAATCACCTGTGTGTTCATCTGGGAAGTCAATATGAAAG
TCAAGTTTTGACTAGCTTCCCCTCTGTTGGGCAATGATTTCCGTGCCCTT
ATGGCAATCCGATTCACCTGCTTAAACACCTGCACTGGATATCCTGTCTG
TTGTTGTGCAAATCGACCTTGATCAAGCAACATATCTCTATCCCATGCAA
ATTCAGCTTGATCAGTGAAAATAGGACATCCCAGCAAAGAGAATCTATCC
TCTTTCCAGACCTCCGGACAGAAGGTCTGCCCATAGATGGCTGCCGAGGA
GGCATAGGGAGGGGGAGCAGAAGCTAATTCACCTTCCTCCTCCGCCTCGG
GTCTTTTATTTTGTCCTTTCTGGTCA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAACAAAATTCACTCATTAGGCCAGGTTTTCTTT
AACTGCAGGGATCCCCCTGCCTCAGCCTCCCACAAATGACTGTTACCAAT
AATTGCTTTAAAATCTTTGGATTACAAAATTACCATTTGTAAAAGGGCAA
AACCCATATTTCTTGGGTTTAATCTTTTTAAAAATTTTGAGTATGAATGT
TTTGCTTGCATATAGGTCAAACGGGAGCGCGACTTGGGAGTCACAACTGT
TTTAAGAGCCACCGTGTGGGTTANTGGGAGTCTGGATGAATGAAAAGTGC
ATTTAACTGGTGAGTCATATCTCCTGCCCCTTGGTTTTCGTCTTCAGACA
CCCACCCACTAGTTTTCACTGTTCTTAGTTTGAAACTTCATACTCTGTTC
TGAAAGTTCTCTTTAAAGATTCGGCTGTTTGATGCGGAGATTACCGACGT
GAGCCACCACGCAATGAAAAGAGACACTTTTCCGTCTCACACCGGTCCCA
TGCAGGAGTTGTAACTAGTGACCCGCTTCTCAGAAGCGCAGAAACTTCAG
GGCAAGAAAACCGTAGGAAGCCGAGCTTAGAGAGAAGTCTCGGTTTCCTG
TAAAACAGAGCGCACTAAGCTCGACAGAGCAGCTTCCGGCGCGGGCCGTG
TTGCCTTGGAAACCGGGGAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_p07.g1 MSMg01no480_p07.g1 CHROMAT_FILE:
MSMg01no480_p07.g1 PHD_FILE: MSMg01no480_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:25 2005
         (267 letters)



>mm_chr11_3093381_3094047
          Length = 667

 Score =  501 bits (259), Expect = e-146
 Identities = 265/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagtctggatgaatgaaaagtgcatttaactggtgagtcatatctcctgccccttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggagtctggatgaatgaaaagtgcatttaactggtgagtcatatctcctgccccttggtt 408

                                                                       
Query: 61  ttcgtcttcagacacccacccactagttttcactgttcttagtttgaaacttcatactct 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 407 ttcgtcttcagacacccacccactagttttcactgttcttagtatgaaacttcatacttt 348

                                                                       
Query: 121 gttctgaaagttctctttaaagattcggctgtttgatgcggagattaccgacgtgagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gttctgaaagttctctttaaagattcggctgtttgatgcggagattaccgacgtgagcca 288

                                                                       
Query: 181 ccacgcaatgaaaagagacacttttccgtctcacaccggtcccatgcaggagttgtaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ccacgcaatgaaaagagacacttttccgtctcacaccggtcccatgcaggagttgtaact 228

                                      
Query: 241 agtgacccgcttctcagaagcgcagaa 267
           |||||||||||||||||||||||||||
Sbjct: 227 agtgacccgcttctcagaagcgcagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)