BAC Information

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BAC

Clone NameMSMg01-481A23
Chromosome11 (Build37)
Map Location 82,416,689 - 82,601,629
singlet/doubletdoublet
Overlap geneCct6b, Ccdc16, Lig3
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481A23.T7 (MSMg01no481_a23.b1)MSMg01-481A23.TJ (MSMg01no481_a23.g1)
ACCAG561554AG561555
length747735
length of high quality
(start - end)		632 (54 - 685)640 (82 - 721)
definitionCHROMAT_FILE: MSMg01no481_a23.b1 PHD_FILE: MSMg01no481_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:33 2005CHROMAT_FILE: MSMg01no481_a23.g1 PHD_FILE: MSMg01no481_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,416,689 - 82,417,315)(82,600,989 - 82,601,629)
sequence
NNCCCTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTAGAAAATCTAGAGAGTGAACCCGGGGATGCAGCAG
GAAAATCACAAAGGGAAAAAAAAAGCTTTCAGCATTTCCCTGTAGGAGCC
ATTAAGACGTATTAAAACTAAAGCCACCTCTCCTGCCCACTTCTCGTTCA
CCTCCGCCCAGGCCTCTCTGTCCCCACGTACACCACATTAGGACCAAATT
GAATTAGAATAATTAACTTTTGGTCACACTTTTAATTTGGTGCAGGAAAT
AAGAGAGCTAATGGAGATTAAACAAGGCTCTCACTCCAGAGACCGTTCGA
GAAAGTGCAAAGGGAGACTCTGGCTCTGGGGAGGAATTAAACAGCCAGGA
AAAGGAGGCTGAGACAGATGTGTGGGAAACATACATGTATCTGTGCATGT
GACAAACATGCTCCCTGTCTCACAGGCAGACATGTACTCTGGGCTAAAAC
ATGTAGCGTAGTTGGCAGTGTTTCCCTGGCATGCAGGAAACCTTGAGTTC
AATTCCCAGTACTGCATATGAAAGACAGGCAATGTGCTTGTAATCTCAAC
AACCAGGAGATACAGGCAGAAGAATTAGAACTTAGACATCATTCCCTCTA
TGGAACAAGTTTGAGGCCAACCTCAACCTACGTGAGACCCTGTTTCAAAG
AAAATATACCCAGACAAAATAAATACCCATGCACTCATCTATGCCTC

TCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGATCCCATTTCAAGA
TGATCAAGAATTCCGATATACAGCCGGGCATGGTGGCGCACGCCTTTAAT
CCCAGCACTCGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACTC
CGTCTCAAAAAAACAAAAAAACAAAAAAAAACCAAAAAGAATTCCGATAT
ACAAGTGTCTGCACATCAAGCTGGCCATGGCTCTGAGCTTTTCAGAGGAA
AAGCATATTCAGTATATGTACAGTCCTACCTCCTGTGGAGCCTTTCTGCA
AGAAGTCATGGATGATCTGGGTCTTGGTGTTATAGCTAGGATTTTCAGCC
ACCATGGCGCACAGCTTCCGGAACTCTCGTAGCAGACAATCTTTGTGCTT
AGGGTCACATTTACTTGCAGACAGACTCGTTCCAGGAGCAGGGCTTGAGG
GGGCTTGCTCAGAGTTGTTGGGTTTTGCTGCTGGTGAGAGAAACAACACA
GATGATTCATTTTTCTTTTCTGGGGAAGCACAAAAAGGAGGAAGACACTA
AAGTTTTGCTGGGGGCTTATGCCATTTTATGCAAGCCCCCAAAGAGTCCC
TAGAGAGAGATGTCCCGGATCCGTGTATCAGGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_a23.b1 MSMg01no481_a23.b1 CHROMAT_FILE:
MSMg01no481_a23.b1 PHD_FILE: MSMg01no481_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:33 2005
         (632 letters)



>mm_chr11_82416486_82417515
          Length = 1030

 Score = 1174 bits (607), Expect = 0.0
 Identities = 623/629 (99%), Gaps = 2/629 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagaaaatctagagagtgaacccggggatgcagcaggaaaatcacaaaggga 63
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  
Sbjct: 204 ggaattcctagaaaatctagagagtgaacccggggacacagcaggaaaatcacaaagg-- 261

                                                                       
Query: 64  aaaaaaaagctttcagcatttccctgtaggagccattaagacgtattaaaactaaagcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaaaaaagctttcagcatttccctgtaggagccattaagacgtattaaaactaaagcca 321

                                                                       
Query: 124 cctctcctgcccacttctcgttcacctccgcccaggcctctctgtccccacgtacaccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctctcctgcccacttctcgttcacctccgcccaggcctctctgtccccacgtacaccac 381

                                                                       
Query: 184 attaggaccaaattgaattagaataattaacttttggtcacacttttaatttggtgcagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attaggaccaaattgaattagaataattaacttttggtcacacttttaatttggtgcagg 441

                                                                       
Query: 244 aaataagagagctaatggagattaaacaaggctctcactccagagaccgttcgagaaagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaataagagagctaatggagattaaacaaggctctcactccagagaccgttcgagaaagt 501

                                                                       
Query: 304 gcaaagggagactctggctctggggaggaattaaacagccaggaaaaggaggctgagaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcaaagggagactctggctctggggaggaattaaacagccaggaaaaggaggctgagaca 561

                                                                       
Query: 364 gatgtgtgggaaacatacatgtatctgtgcatgtgacaaacatgctccctgtctcacagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatgtgtgggaaacatacatgtatctgtgcatgtgacaaacatgctccctgtctcacagg 621

                                                                       
Query: 424 cagacatgtactctgggctaaaacatgtagcgtagttggcagtgtttccctggcatgcag 483
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 caggcatgtactctgggctaaaacatgtagcgtagttggtagtgtttccctggcatgcag 681

                                                                       
Query: 484 gaaaccttgagttcaattcccagtactgcatatgaaagacaggcaatgtgcttgtaatct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaaaccttgagttcaattcccagtactgcatatgaaagacaggcaatgtgcttgtaatct 741

                                                                       
Query: 544 caacaaccaggagatacaggcagaagaattagaacttagacatcattccctctatggaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caacaaccaggagatacaggcagaagaattagaacttagacatcattccctctatggaac 801

                                        
Query: 604 aagtttgaggccaacctcaacctacgtga 632
           |||||||||||||||||||||||||||||
Sbjct: 802 aagtttgaggccaacctcaacctacgtga 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1030
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1020
Effective search space:   634440
Effective search space used:   634440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_a23.g1 MSMg01no481_a23.g1 CHROMAT_FILE:
MSMg01no481_a23.g1 PHD_FILE: MSMg01no481_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:33 2005
         (640 letters)



>mm_chr11_82600602_82601642
          Length = 1041

 Score = 1224 bits (633), Expect = 0.0
 Identities = 639/641 (99%), Gaps = 1/641 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgagatcccatttcaagatgatcaagaattccgatatacagccgggcatggtggcgcac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 atgagatcccatttcaagatgatcaagaattccgatatacagccgggcatggtggcgcac 969

                                                                        
Query: 61   gcctttaatcccagcactcgggaggcagaggcaggtggatctctgagttcgaggccagcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 968  gcctttaatcccagcactcgggaggcagaggcaggtggatctctgagtttgaggccagcc 909

                                                                        
Query: 121  tggtctacagagtgagttccaggacagccaaggctatacagagaaactccgtctcaaaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  tggtctacagagtgagttccaggacagccaaggctatacagagaaactccgtctcaaaaa 849

                                                                        
Query: 181  aacaaaaaaac-aaaaaaaaaccaaaaagaattccgatatacaagtgtctgcacatcaag 239
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  aacaaaaaaacaaaaaaaaaaccaaaaagaattccgatatacaagtgtctgcacatcaag 789

                                                                        
Query: 240  ctggccatggctctgagcttttcagaggaaaagcatattcagtatatgtacagtcctacc 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  ctggccatggctctgagcttttcagaggaaaagcatattcagtatatgtacagtcctacc 729

                                                                        
Query: 300  tcctgtggagcctttctgcaagaagtcatggatgatctgggtcttggtgttatagctagg 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  tcctgtggagcctttctgcaagaagtcatggatgatctgggtcttggtgttatagctagg 669

                                                                        
Query: 360  attttcagccaccatggcgcacagcttccggaactctcgtagcagacaatctttgtgctt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  attttcagccaccatggcgcacagcttccggaactctcgtagcagacaatctttgtgctt 609

                                                                        
Query: 420  agggtcacatttacttgcagacagactcgttccaggagcagggcttgagggggcttgctc 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  agggtcacatttacttgcagacagactcgttccaggagcagggcttgagggggcttgctc 549

                                                                        
Query: 480  agagttgttgggttttgctgctggtgagagaaacaacacagatgattcatttttcttttc 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  agagttgttgggttttgctgctggtgagagaaacaacacagatgattcatttttcttttc 489

                                                                        
Query: 540  tggggaagcacaaaaaggaggaagacactaaagttttgctgggggcttatgccattttat 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488  tggggaagcacaaaaaggaggaagacactaaagttttgctgggggcttatgccattttat 429

                                                     
Query: 600  gcaagcccccaaagagtccctagagagagatgtcccggatc 640
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 428  gcaagcccccaaagagtccctagagagagatgtcccggatc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space:   649530
Effective search space used:   649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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