Query= MSMg01no481_l06.b1 MSMg01no481_l06.b1 CHROMAT_FILE:
MSMg01no481_l06.b1 PHD_FILE: MSMg01no481_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:25 2005
(663 letters)
>mm_chr11_16760457_16761519
Length = 1063
Score = 1189 bits (615), Expect = 0.0
Identities = 651/663 (98%)
Strand = Plus / Minus
Query: 1 taaagcagggatctggggaaggaagtgtctggctggctgagttcctcacttcagtggcat 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 taaagcagggggctggggaaggaagtgtctggctggctgagttcctcacttcagtggcat 687
Query: 61 ggctacatactgctcggctcccactctacattctatcttttgcaccccatccccttccca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggctacatactgctcggcttccactctacattctatcttttgcaccccatccccttccca 627
Query: 121 gtccacactgctaccccatcagaaaggcagggcacacagagatgacagaaccaggcctgg 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtccactttgctaccccatcagaaaggcagggcacacagagatgacagaaccaggcctgg 567
Query: 181 gcacagggctttgagagagctctcttttttccattcctttctctgtaaaatgttagtgta 240
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 566 gcacagggctttgagagagctctcttatttccatgcctttctctgtaaaatgttagtgta 507
Query: 241 caatacatgctgtgaaagaagaccttagcattaagtgagttactgacttgagaaacattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caatacatgctgtgaaagaagaccttagcattaagtgagttactgacttgagaaacattt 447
Query: 301 tatgaagtgggggtgggggccggggtttggacttgctgtttctcctcatttcaatcatct 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 446 tatgaagtgggggtgggggccggggtttggacttgctgtttatcctcatttcaatcatct 387
Query: 361 tctccagtttccttttcaacttcaaaaccttcccttctttccctaactcaacctgaggtt 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 tctccagtttccttttcaacttcaaacccttcccttctttccctaactcaacctgaggtt 327
Query: 421 ttatgtaacagtattaaccttgaggcctgcttctctatcatggaaatttttgaagtacat 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttatgtaacaatattaaccttgaggcctgcttctctatcatggaaatttttgaagtacat 267
Query: 481 tagacccctctcccataggtctcagtgttcaactgcttttagtccactttggtaaagaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagacccctctcccataggtctcagtgttcaactgcttttagtccactttggtaaagaca 207
Query: 541 tcaaatgaccaaattcacaagcattggttgcagcactcgaactcttctgttaggtttcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 tcaaatgaccaaattcacaagcattggttgcagcactcgaactcttctgttagttttcat 147
Query: 601 tattgttgttaatatctttctgtgcctaatcaatgaattgagtgacaagagtcatactga 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tattgttgttagtatctttctgtgcctaatcaatgaattgagtgacaagagtcatactga 87
Query: 661 tac 663
|||
Sbjct: 86 tac 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_l06.g1 MSMg01no481_l06.g1 CHROMAT_FILE:
MSMg01no481_l06.g1 PHD_FILE: MSMg01no481_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:25 2005
(694 letters)
>mm_chr11_16554842_16555940
Length = 1099
Score = 1255 bits (649), Expect = 0.0
Identities = 685/699 (97%), Gaps = 5/699 (0%)
Strand = Plus / Plus
Query: 1 ctccaa-tattcccacggctggtacatgtttgtttgtttgttt----tccttactatgta 55
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctccaaatattcccacggctggtacatgtttgtttgtttgtttgttttccttactatgta 260
Query: 56 ctctttgcttgatttaatcagtttttggtgaatgtgggatttttctcagggatggttatc 115
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctcttttcttgatttaatcagtttttggtgaatgggggatttttctcagggatggttatc 320
Query: 116 ccaggaaaggaagtctttgggaaatgtgattggagaagattatgcatgacaacatccttt 175
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccaggaaaggaagtctctgggaaatgtgattggagaagattaggcatgacaacatccttt 380
Query: 176 tgtctctttactacctcagtggttttctgaatcactgactgctgcagctgtgcatgtgtt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctctttactacctcagtggttttctgaatcactgactgctgcagctgtgcatgtgtt 440
Query: 236 tgcttcaaagtgggaaagctagagtttggatagaaatatctcttggaaaagcactcgatc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttcaaagtgggaaagctagagtttggatagaaatatctcttggaaaagcactcgatc 500
Query: 296 cactcaatgttccatcacgtctcatgctttattctagtggcaagccccctcattctaagt 355
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactcaatgttccatcacatcttatgctttattctagtggcaagccccctcattctaagt 560
Query: 356 tctaaaatgcatactttctttgtactggttccctaagccttcctcgcacatatttagcgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaaaatgcatactttctttgtactggttccctaagccttcctcgcacatatttagcgt 620
Query: 416 ttctatagcaatgtatcttagagtttcagacataagtctaacatgaccttatttgataca 475
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ttctatagcaatgtaccttagagtttcagacataagtctaacatgactttatttgataca 680
Query: 476 aaagaagtgtatttccaagcctttgatgcgctgctcgtgagcctatggtgagtgtgggtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagaagtgtatttccaagcctttgatgcgctgctcgtgagcctatggtgagtgtgggtc 740
Query: 536 tccagcagcgagcgctcgtcatctggttttggcaacagttttacagcagttatagaaaag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccagcagcgagcgctcgtcatctggttttggcaacagttttacagcagttatagaaaag 800
Query: 596 tctgaaaggtttcagaatgtatttctgtagctgagttttccttgtaataaaaaatttagt 655
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 tctgaaaggtttcagaatgtatttctgtagctgagttttccttggaataaaaaatttagt 860
Query: 656 cactttaatatgttttcacatgaatgaccttcataacac 694
|||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cactttaatatgttttcacatgaatgaccttcataacac 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1099
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1089
Effective search space: 744876
Effective search space used: 744876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
