BAC Information

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BAC

Clone NameMSMg01-482G11
Chromosome11 (Build37)
Map Location 46,948,104 - 46,948,719
singlet/doubletsinglet
Overlap geneSgcd
Upstream geneAdam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482G11.T7 (MSMg01no482_g11.b1)MSMg01-482G11.TJ (MSMg01no482_g11.g1)
ACCAG562577AG562578
length748670
length of high quality
(start - end)
674 (73 - 746)621 (50 - 670)
definitionCHROMAT_FILE: MSMg01no482_g11.b1 PHD_FILE: MSMg01no482_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:18 2005CHROMAT_FILE: MSMg01no482_g11.g1 PHD_FILE: MSMg01no482_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATCTGACCGAAACCAAATGGCTGAGAAGCACCTGAAAAAA
TGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCATAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAATATCCCACAATACCTCTCCTGG
GCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGTCACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAACCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTGAAAAGAATGAAATTCCTAGGCAAATGGAT
GGACCTGGAGGAAATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACT
CACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAA
TACCCAAGATACAAGACACAATTTGCAAAAACACATGAAACTCAAGAAGA
ACAAAGACCAAAGTGTGGATACTTTGCCCCTTCTTAAAATTGGGAACA
GCCTGGCTCCCAAAATTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GTACCCCACATCCAGAAGGACAGGTTGGTTGGGCACAGTCTGACTCCGTG
CTCTGGGCTACCAGATGAATTTGCAGATTGCTTTATGCCAATCTATCTGA
GTCCCTGGATTCCTTGTCCTTCTAGGTCACCTTCAGGTCAGCTTGAGGGT
AACAGTAGTGAGCAGGACAGTGCAGGGAACACTCTTTGTGCACAGAGGTC
ACACATGGTCTTGTCTTACAACTCCTCACTTGTTCTGATACATTTTATGT
CTTGGGAATGCTTACAGGGCTGACATTTTCCTGGTTCCAGTCAGAAGCAG
TCAGAGAACAAAATGAAATTCACAGGGACCCAGCTGCCATGTGAGAGTCT
TCCCCTTTGTGTATCCTCTCATGCCCTTTCCCCGGTAGCCTTTCTATCAC
AAATAAACTGGAAGGCCATAAGAAAGAGCACTGGGCAAGAATGAAGCTCT
TTGTTTAAACTCTAAAGATTCCATTTTCCAAGATGCCAGCTTGTTTTAAA
CATTAATGCTAAAGTATAGTATTTTGATATGTTGGTAAAAAAGAAACAGG
CAAGCAAAATGACTCATATTGTAAAAGTATCTATCACCAAGCCTAACCAC
CTGAATTTGATCCTTGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_g11.g1 MSMg01no482_g11.g1 CHROMAT_FILE:
MSMg01no482_g11.g1 PHD_FILE: MSMg01no482_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:18 2005
         (621 letters)



>mm_chr11_46947714_46948733
          Length = 1020

 Score =  986 bits (510), Expect = 0.0
 Identities = 590/624 (94%), Gaps = 14/624 (2%)
 Strand = Plus / Minus

                                                                        
Query: 4    accccacatccagaaggacaggttggttgggcacagtctgactccgtgctctgggctacc 63
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1006 accccacatccagaaggacaggttggttggccacagtctgactccgtgctctgggctacc 947

                                                                        
Query: 64   agatgaatttgcagattgctttatgccaatctatctgagtccctggattccttgtccttc 123
            |||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||||| 
Sbjct: 946  agatgagtttgcagattgctttacgccaatccatctgagtccctggattccttatccttt 887

                                                                        
Query: 124  taggtcaccttcaggtcagcttgagggtaacagtagtgagcaggacagtgcagggaacac 183
            ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 886  taggtcaccttcaggtcagcttgagggtaacagtagtgagtgggacagtgcagggaacac 827

                                                                        
Query: 184  ------tctttgtgcacagaggtcacacatggtcttgtcttacaactcctcacttgttct 237
                         ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 826  aaagaa-------gcacagaggtcacacatggtcttgtcttacaactcctcatttgttct 774

                                                                        
Query: 238  gatacattttatgtcttgggaatgcttacagggctgacattttcctggttccagtcagaa 297
            |||||||   | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 773  gatacatcagaggtcttgggaatgcttacatggctgacattttcctggttccagtcagaa 714

                                                                        
Query: 298  gcagtcagagaacaaaatgaaattcacagggacccagctgccatgtgagagtcttcccct 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  gcagtcagagaacaaaatgaaattcacagggacccagctgccatgtgagagtcttcccct 654

                                                                        
Query: 358  ttgtgtatcctctcatgccctttccccggtagcctttctatcacaaataaactggaaggc 417
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 653  ttgtgtatcctctcatgccctttccccggtagcctttctattacaaataaactggaaggc 594

                                                                        
Query: 418  cataagaaagagcactgggcaagaatgaagctctttgtttaaactctaaagattccattt 477
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 593  cataagaaagagcactgggcaagaatgaagctctttgtttaaactctgaagattccattt 534

                                                                        
Query: 478  tccaagatgccagcttgttttaaacattaatgctaaagtatagtattttgatatgttggt 537
            |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 533  tccaagatgccagcctgttttaaacatcaatgctaaagtatagtattttgatatattggt 474

                                                                        
Query: 538  aaaaaagaaacaggcaagcaaaatgactcatattgtaaaagtatctatcaccaagcctaa 597
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 473  aaaaaagaaacaggcaagcaaaatgactcatattgtaaaagtatctatcacc-agcctaa 415

                                    
Query: 598  ccacctgaatttgatccttggaac 621
            |||||| |||||||||||||||||
Sbjct: 414  ccacctaaatttgatccttggaac 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)