BAC Information

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BAC

Clone NameMSMg01-482J15
Chromosome11 (Build37)
Map Location 89,519,539 - 89,519,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482J15.T7 (MSMg01no482_j15.b1)MSMg01-482J15.TJ (MSMg01no482_j15.g1)
ACCAG562728AG562729
length709758
length of high quality
(start - end)
674 (36 - 709)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no482_j15.b1 PHD_FILE: MSMg01no482_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:33 2005CHROMAT_FILE: MSMg01no482_j15.g1 PHD_FILE: MSMg01no482_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAATACGACTCCTATTTCCAGACGATCCGCGGAATTCTTTTTT
TTTCACTGCATTTATTTATTCATTTACTTTGCATCCCAATCACTGCTTCC
ACTCCTGGTCCCCCATCACACAAACCCTCCCCTCATCTCCCATCCCTTTT
TCCTCTGAGAGGGTAGAGGTCCCCACTGGGTATCCCCTCACCCTGCCATA
TCAAGTCTCTGCAGGGCTAGGCACATTCTCCACCACTGAGGCCAGATAAG
GGAGCCCAACAAGAAGAATACATTCCAGAGACAGGCAACAGCTTTAGGAA
TAGCCCTTGTTCCATTTGTTCGGCATCTCCATGAAGACTGAGCTGCTCAT
CTGCTACGTAAGTATGGGGCAGCCTAGGCTTAGCCTGTGTATGCTTTTTG
CCTGGTGGTTCAGTCTCTAAGAGTCCCCAAGAGTCCAAGTTAGTTGACTC
TGTTCATCTTCCTGTGGAGTCCCTATCCTCTTCAGGGCTCTGAATACTTC
CCCCAACTCTTCCATAAGAGTCTCTAAGCTCCTTTCCACTGTTTGACTGT
GGGTCTCTGCATCCATCTGTGTCAGCTGCTGGGTGAGAGCTCTCAGAGGA
AAGCTATGTTAGCCTCCTGTCTGCAAACATAACCAAGTATCATTGATAGT
GTCAGGAATTGATGCTTGTCCATGGGATGAGTCTCTAGTTGGTCCGGTTA
TTGCTTGGN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTCTCAGGTGATTCCTAGGCATATA
ATTGCAGTCAGGATCTGGATATTTTTACTTAGTAAGCTATGCATCTGAAC
AGCCAGTACAGATGTGTACCTGTAACTAAATGCACGCTGAAGAGGTGGAG
GCACTTACAGAGCAAAGAGATTCCTCTGCCGGGTGACACTCTCAGGCACC
ACCTCCGAGTCTGACTGTTGTAACAAACCACATCGTTTCCTTAATAGAAA
GACAGAAACAGCTCCGAGTTCTTTTAACTTTCAGCCTCTTCCTACGAAAT
GAGCTGCTAAGGACTGGGTTGCTGACAGCACACTAGAGATCGCAGACAAT
GACAGAGCTGTCATGAGGAAACCCCAGGTGGGGTCCAAGAAAGCAGAAAC
ATCAGGAACACAGTTTTCTCCCGAAGTCCATGAATATGTAAATTAAAATG
TATTGTACAGCACTGTCTTTTATTGTTTCTTGGGACAGGTTTGATCTTTA
TTGCCAGAATCTATAATTTTTTCATGTTGCTTCTTCTATGCGCACAGACT
ACTGAACAACCCACAAACAACAATGACCAACAGTGACCAAAAACCAACCA
ACAACCCACCCTACCTCTTGGGGCCCTGGCACTTATATACCCTCTGAAAA
ATTCCCAGAACTACAAACTTCACCCGGTTGCAAAGACGATCTCTAGCTGG
CAAAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_j15.g1 MSMg01no482_j15.g1 CHROMAT_FILE:
MSMg01no482_j15.g1 PHD_FILE: MSMg01no482_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:33 2005
         (244 letters)



>mm_chr11_89519339_89519982
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctcaggtgattcctaggcatataattgcagtcaggatctggatatttttacttagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctcaggtgattcctaggcatataattgcagtcaggatctggatatttttacttagta 260

                                                                       
Query: 61  agctatgcatctgaacagccagtacagatgtgtacctgtaactaaatgcacgctgaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctatgcatctgaacagccagtacagatgtgtacctgtaactaaatgcacgctgaagag 320

                                                                       
Query: 121 gtggaggcacttacagagcaaagagattcctctgccgggtgacactctcaggcaccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaggcacttacagagcaaagagattcctctgccgggtgacactctcaggcaccacct 380

                                                                       
Query: 181 ccgagtctgactgttgtaacaaaccacatcgtttccttaatagaaagacagaaacagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgagtctgactgttgtaacaaaccacatcgtttccttaatagaaagacagaaacagctc 440

               
Query: 241 cgag 244
           ||||
Sbjct: 441 cgag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)