BAC Information

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BAC

Clone NameMSMg01-482M10
Chromosome11 (Build37)
Map Location 50,186,295 - 50,186,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik
Downstream geneHnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482M10.T7 (MSMg01no482_m10.b1)MSMg01-482M10.TJ (MSMg01no482_m10.g1)
ACCAG562860AG562861
length733741
length of high quality
(start - end)		688 (46 - 733)655 (76 - 730)
definitionCHROMAT_FILE: MSMg01no482_m10.b1 PHD_FILE: MSMg01no482_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:45 2005CHROMAT_FILE: MSMg01no482_m10.g1 PHD_FILE: MSMg01no482_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCATTTCCTAAGGTGTCATTCCCACCAGGATAGAAAGGCTCTTC
AACAAATGTTAAAATTAATGATTGGCAGGTTGGAACCAAATAGCCCTGGT
GCTCTAGCTCCATAGTAAAACAAACTTCAAACAGCTGAGTGGTGGTGGTG
CACACCTCTGTTCCCAGCACTCAGGAAGCAGGCCAGGCCAGTCTGTAGAG
TGAGTGCCAGGATAGCCAGGTCTACATGAAGCAAACCTTGTTTTGAAAAA
TCAAAAGAAAAACAGAATATGAAAGAAGAAAAGAATATCACAGATTTTAA
AAGAATTAAATTTATAGTTGGGAGATTTGGATTTCTCTTTTGAGAAAATT
TCTACATTGTAGCCTAGGTTAACTTGGAACTCCGCATGTAGCCCAAGATA
GCCAGCCTAGAGCTCACTATGTAACCCAGACTAACTATGAATTGCCAGTC
CTCCCATCTCTCTCAGCCTCTGGGTACTGGGACAGGAGGTAAGGGCTACT
GTGCCTTGTTGAAAGATTTAAGCTTAAAATTGTAAAAAGCTGGGGTTAGC
AAAATTGCCCGGTGGTTAAGAACATCTGTTCCTCTAGGGGACCTGAGTTC
AAGTTCTAGCACCTATGTTAGGTGGCCATCACTGTGGTTCCAGGGTACAC
ACGGGGGCAGACACATAATTAAAACTTTTTTTA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAACCAGAGACCTGTTGGAA
CATGGCCCCCCAAATTGGTTTTCCAGTCTATTGGGCGATGTGGACTTTGC
AGTGACTTCATCGAGTGTTCTCAGAAGAGCACTGGCTCCTTTTATAAAAG
ATTGTAGATCTTCAGATTGATAATTCTGCCATGTTCGTTTCCTGAAAGTC
AGGGTTGGCTTGTGAAAAGTTGTTAAACAACATCCTTAATGTGAAATGTC
CACCCTCACTCTAAGCTACTTCCCCCTTTTCAAAGCATCGAATTTGGTAG
TCTATACAAGCAGGGAATTTGGAAGTTTTTGTATATTGTTGATTGTCTGC
ACACGTCCTGCCTGAAATAACATGATTGTTTATGAAAAGTATCTTTAATA
AAGCTGGTTATAGTTAGGCTTGGGAAAAAAATTACAATTCAAGCTAAGGG
GTGGTGGTGCATACCTTTAGTCCAGGTACCCAGGAGGCAGAGCCAGGTGG
ATCTCTGAGTTAGAGACCAGCCAGTTCTACAGAGCTAGTTCCAGGACATT
CAAAGAAACCCTTTCTCAAAAACAAAAACAAAAGCCACAAAAAAAATTAC
AGTTCAGTAAGGCACACAGTGCCCCAGCTACACAGTGAGCTTGAAGGCAG
CATGGTGTATATGAGACACTATCATAAACAATGATGGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_m10.b1 MSMg01no482_m10.b1 CHROMAT_FILE:
MSMg01no482_m10.b1 PHD_FILE: MSMg01no482_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:45 2005
         (688 letters)



>mm_chr11_50186135_50187222
          Length = 1088

 Score = 1261 bits (652), Expect = 0.0
 Identities = 676/684 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcatttcctaaggtgtcattcccaccaggatagaaaggctcttcaacaaatgt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 844 gaattcatcatctcctaaggtgtcattcccaccaggatagaaaggctcttcaataaatgt 785

                                                                       
Query: 65  taaaattaatgattggcaggttggaaccaaatagccctggtgctctagctccatagtaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 taaaattaatgattggcaggttggaaccaaatagccctggtgctctagctccatagtaaa 725

                                                                       
Query: 125 acaaacttcaaacagctgagtggtggtggtgcacacctctgttcccagcactcaggaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 acaaacttcaaacagctgagtggtggtggtgcacacctctgttcccagcactcaggaagc 665

                                                                       
Query: 185 aggccaggccagtctgtagagtgagtgccaggatagccaggtctacatgaagcaaacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aggccaggccagtctgtagagtgagtgccaggatagccaggtctacatgaagcaaacctt 605

                                                                       
Query: 245 gttttgaaaaatcaaaagaaaaacagaatatgaaagaagaaaagaatatcacagatttta 304
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 604 gttttgaaaaatcaaaagaaaaacagaaaaggaaagaagaaaagaatatcacagatttta 545

                                                                       
Query: 305 aaagaattaaatttatagttgggagatttggatttctcttttgagaaaatttctacattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaagaattaaatttatagttgggagatttggatttctcttttgagaaaatttctacattg 485

                                                                       
Query: 365 tagcctaggttaacttggaactccgcatgtagcccaagatagccagcctagagctcacta 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagcctaggttaacttggaactcagcatgtagcccaagatagccagcctagagctcacta 425

                                                                       
Query: 425 tgtaacccagactaactatgaattgccagtcctcccatctctctcagcctctgggtactg 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 424 tgtaacccagactaactatgaattgccagtcctcccatctctctcagcctgtgggtactg 365

                                                                       
Query: 485 ggacaggaggtaagggctactgtgccttgttgaaagatttaagcttaaaattgtaaaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggacaggaggtaagggctactgtgccttgttgaaagatttaagcttaaaattgtaaaaag 305

                                                                       
Query: 545 ctggggttagcaaaattgcccggtggttaagaacatctgttcctctaggggacctgagtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctggggttagcaaaattgcccggtggttaagaacatctgttcctctaggggacctgagtt 245

                                                                       
Query: 605 caagttctagcacctatgttaggtggccatcactgtggttccagggtacacacgggggca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 244 caagttctagcacctatgttaggtggccatcactgtggttccagggtacacacaggggca 185

                                   
Query: 665 gacacataattaaaacttttttta 688
           |||||||||||||||||| |||||
Sbjct: 184 gacacataattaaaacttgtttta 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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