BAC Information

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BAC

Clone NameMSMg01-482O14
Chromosome11 (Build37)
Map Location 58,878,504 - 59,013,466
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1
Upstream geneLOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneMrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482O14.T7 (MSMg01no482_o14.b1)MSMg01-482O14.TJ (MSMg01no482_o14.g1)
ACCAG562964AG562965
length682744
length of high quality
(start - end)		615 (12 - 626)650 (75 - 724)
definitionCHROMAT_FILE: MSMg01no482_o14.b1 PHD_FILE: MSMg01no482_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:55 2005CHROMAT_FILE: MSMg01no482_o14.g1 PHD_FILE: MSMg01no482_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,878,504 - 58,879,105)(59,012,817 - 59,013,466)
sequence
CTCACTTTTCGGAGAGGATCCGCGGAATTCCTTCTTTGCTTCTTATGCCA
TCATTCTGATTGTGCTGAGAGAGCAGAGAGCACACGGGGTGCCCGAGCCC
CTCCCCCATACAGTCACAGCAAGCCCCACTTCTCAGAACAGAACAAGCCG
GGAAGAAGGGACGACTTGGCTGGGTGGGAAGAAGTCACAAGCCTCTTCCT
GGATATGTCAGCCTAGAATGGGTGGACACAAGGTCTAGCCCCATCTTCAC
AGTGCAGGCACACTCTCTGGTGTAGAGAGAGAGTAGAGGCAGAGATCCAT
GACTGAACAAATGGATCTAACACTGCCCTCAGCTACTATGCAGGAAACAG
TCACAGAGAAGAGGAGGGACAAACTGGTTCTTGCTTGTCAAAGCTGGTGA
CTTCCTCTGGCTCCCAGGCTAAGACTGAGAACTCTTGGATGTCCATCTCT
GTGTGCTTGGAGGTCTTTAAGGACAGTGGCTCAGAGTATCTTCGGGACTT
TATGGTCCAGGGTAGCTTCTAAAAATGCAGCAGTCTTGAAAGGCCCAGGC
AAGGCATCCATATGCATCACTCTTGGGGGAAACCCAGTTTTGAAAGCAGC
TCTTTGCCAGGACGCTCCATACCTCAGCCATCAACAGCATGGTTGGGAAT
AGGGAGTGTGTCTTCCTGTGACCTCTTTCTAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGGACTACACAGCAAGCTGGAGGC
AGGCGATCAGAATTCCAAGGACTACACAGCAAGTTTGAGACTAGCCTGAG
ATACAGGAGACCTAGTCTCAGGAGTTAAAAAAATAAAATAAAGACAAGCC
TTGAAACCAAGACTCTCTCCATTCTGAAACCTTTGGAGAAAAGGCCAAGT
TGTGCCTGGACTATCATGCCCAAAAGCTTCTCTGAAATTTCACCCTGCTC
ACCGGAAGGCCTGCCTAGCAGAGGTTCCAGTCACTTCAATGTGTGGATGA
CTTCCTCTGGGCCCTTTCATGGCAGCAGGTGAGGGTATTTTTGGCGGCCA
AGGGCAGCAAAGTTTTGTTTTGTTTTCATTTGCAATAAGGTTTCACTATG
GAGGGCAGGGAAGCCAGCATCTCACTATATAGCTGAGGGTAGCCTCAAAC
TTGTGATCCTCCTGCCTTAGCCTCTTCAGTGCTGGGTCTGTAGTCATGAA
TCATCATATCTGGATAAGAAAGGGGCACTTTTAAAGTCATAGGTGAAGTA
TAAATTATTGCAGTCATGGAAAACAGAATTAAACTGGGTATGATGGTACA
CGCCTTTAATCCCAGCACTCAGGAGGAAGAGGCGGGAAAATCTCTGTGAG
TTCGAGGCCAACCTGGTCTACAAAGTTCCAGGACAGCCAGGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_o14.b1 MSMg01no482_o14.b1 CHROMAT_FILE:
MSMg01no482_o14.b1 PHD_FILE: MSMg01no482_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:55 2005
         (615 letters)



>mm_chr11_58878291_58879305
          Length = 1015

 Score = 1094 bits (566), Expect = 0.0
 Identities = 593/602 (98%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattccttctttgcttcttatgccatcattctgattgtgctgagagagcagagagcaca 73
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattccttcagtggttcttatgccatcattctgattgtgctgagagagcagagagcaca 273

                                                                       
Query: 74  cggggtgcccgagcccctcccccatacagtcacagcaagccccacttctcagaacagaac 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cggggtgcccgagcccctcccccatacagtcacagcaagccccacttctcagaacagaac 333

                                                                       
Query: 134 aagccgggaagaagggacgacttggctgggtgggaagaagtcacaagcctcttcctggat 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagccgggaagaagggacgacttggctgggtgggaagaagtcacaagcctcttcctggat 393

                                                                       
Query: 194 atgtcagcctagaatgggtggacacaaggtctagccccatcttcacagtgcaggcacact 253
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgtcagcctagaatgggtggacacaaggtctagccccatcttcacagtgcaggcacact 453

                                                                       
Query: 254 ctctggtgtagagagagagtagaggcagagatccatgactgaacaaatggatctaacact 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctctggtgtagagagagagtagaggcagagatccatgactgaacaaatggatctaacact 513

                                                                       
Query: 314 gccctcagctactatgcaggaaacagtcacagagaagaggagggacaaactggttcttgc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gccctcagctactatgcaggaaacagtcacagagaagaggagggacaaactggttcttgc 573

                                                                       
Query: 374 ttgtcaaagctggtgacttcctctggctcccaggctaagactgagaactcttggatgtcc 433
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 574 ttgtcaaagctggagacttcctctggctcccaggctaagactgagaactcttgaatgtcc 633

                                                                       
Query: 434 atctctgtgtgcttggaggtctttaaggacagtggctcagagtatcttcgggactttatg 493
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 634 atctctgtgtgcttggaggtctttaaggacagtggttcagagtatcttcgggactttatg 693

                                                                       
Query: 494 gtccagggtagcttctaaaaatgcagcagtcttgaaaggcccaggcaaggcatccatatg 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gtccagggtagcttctaaaaatgcagcagtcttgaaaggcccaggcaaggcatccatatg 753

                                                                       
Query: 554 catcactcttgggggaaacccagttttgaaagcagctctttgccaggacgctccatacct 613
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 754 catcactcttgggggaaacccagttttgaaaacagctgtttgccaggacgctccatacct 813

             
Query: 614 ca 615
           ||
Sbjct: 814 ca 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_o14.g1 MSMg01no482_o14.g1 CHROMAT_FILE:
MSMg01no482_o14.g1 PHD_FILE: MSMg01no482_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:55 2005
         (650 letters)



>mm_chr11_59012815_59013864
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggactacacagcaagctggaggcaggcgatcagaattccaaggactacacagcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caaggactacacagcaagctggaggcaggcgatcagaattccaaggactacacagcaagt 593

                                                                       
Query: 61  ttgagactagcctgagatacaggagacctagtctcaggagttaaaaaaataaaataaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttgagactagcctgagatacaggagacctagtctcaggagttaaaaaaataaaataaaga 533

                                                                       
Query: 121 caagccttgaaaccaagactctctccattctgaaacctttggagaaaaggccaagttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 caagccttgaaaccaagactctctccattctgaaacctttggagaaaaggccaagttgtg 473

                                                                       
Query: 181 cctggactatcatgcccaaaagcttctctgaaatttcaccctgctcaccggaaggcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cctggactatcatgcccaaaagcttctctgaaatttcaccctgctcaccggaaggcctgc 413

                                                                       
Query: 241 ctagcagaggttccagtcacttcaatgtgtggatgacttcctctgggccctttcatggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctagcagaggttccagtcacttcaatgtgtggatgacttcctctgggccctttcatggca 353

                                                                       
Query: 301 gcaggtgagggtatttttggcggccaagggcagcaaagttttgttttgttttcatttgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcaggtgagggtatttttggcggccaagggcagcaaagttttgttttgttttcatttgca 293

                                                                       
Query: 361 ataaggtttcactatggagggcagggaagccagcatctcactatatagctgagggtagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ataaggtttcactatggagggcagggaagccagcatctcactatatagctgagggtagcc 233

                                                                       
Query: 421 tcaaacttgtgatcctcctgccttagcctcttcagtgctgggtctgtagtcatgaatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcaaacttgtgatcctcctgccttagcctcttcagtgctgggtctgtagtcatgaatcat 173

                                                                       
Query: 481 catatctggataagaaaggggcacttttaaagtcataggtgaagtataaattattgcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 catatctggataagaaaggggcacttttaaagtcataggtgaagtataaattattgcagt 113

                                                                       
Query: 541 catggaaaacagaattaaactgggtatgatggtacacgcctttaatcccagcactcagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 catggaaaacagaattaaactgggtatgatggtacacgcctttaatcccagcactcagga 53

                                                             
Query: 601 ggaagaggcgggaaaatctctgtgagttcgaggccaacctggtctacaaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ggaagaggcgggaaaatctctgtgagttcgaggccaacctggtctacaaa 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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