Query= MSMg01no482_p15.b1 MSMg01no482_p15.b1 CHROMAT_FILE:
MSMg01no482_p15.b1 PHD_FILE: MSMg01no482_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:00 2005
(557 letters)
>mm_chr11_11944515_11945469
Length = 955
Score = 992 bits (513), Expect = 0.0
Identities = 546/559 (97%), Gaps = 6/559 (1%)
Strand = Plus / Minus
Query: 1 aagttctcaaattctctaaaaacaaggaatcaagagagaagggggagataagttaaataa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 755 aagttctcaaattctctaaaaacaaggaatcaagagagaaggggaagataggt----taa 700
Query: 61 accctggttagtaatggactttatatcttcttttcattatcacccttttttgttt-ctcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 699 accctggttagtaatggactttatatcttcttttcattatcacccttttttttttcctcc 640
Query: 120 ttggatctaggacacaggtctaaatagaaataaaaatcacattataccacccaatagtaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttggatctaggacacaggtctaaatagaaataaaaatcacattataccacccaatagtaa 580
Query: 180 acaaaaacacctttcctaaaaaggaaaatattgatcatattacaatctaatcacagaatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acaaaaacacctttcctaaaaaggaaaatattgatcatattacaatctaatcacagaatt 520
Query: 240 atactttaatgatacctcatgaggttatgggttgaaataactgattgcataataaaataa 299
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atacataaatgatacctcatgaggttatgggttgaaataactgattgcataataaaataa 460
Query: 300 taaaatggcaagaaaattacaagagaggcaactctgcatagagaaaaaa-agatgtatcg 358
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 459 taaaatggcaagaaaatgacaagagaggcaactctgcatagagaaaaaagagatgtatcg 400
Query: 359 gtacagagtcagtcaagttggaaacagaagctcttaattaagtagccttgaggtatctcg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtacagagtcagtcaagttggaaacagaagctcttaattaagtagccttgaggtatctcg 340
Query: 419 cttctccaaattagtttcctggattataacctaagaccctagtagcatttatctcacagt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttctccaaattagtttcctggattataacctaagaccctagtagcatttatctcacagt 280
Query: 479 atattataagtatcacctgagacatgcatgtaaaatcagtgtttacataaaacatttgtc 538
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 279 atattataagtatcacctgagacatgcatgtaaaatcagtgtttacgtaaaacatttgtc 220
Query: 539 catgtgtaagatgatgcag 557
|||||||||||||||||||
Sbjct: 219 catgtgtaagatgatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_p15.g1 MSMg01no482_p15.g1 CHROMAT_FILE:
MSMg01no482_p15.g1 PHD_FILE: MSMg01no482_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:00 2005
(649 letters)
>mm_chr11_11771520_11772568
Length = 1049
Score = 1143 bits (591), Expect = 0.0
Identities = 629/649 (96%), Gaps = 12/649 (1%)
Strand = Plus / Plus
Query: 1 agaaggctttagaaaacttgaggaggtgggggaaatggattttccccttgggcttttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaggctttagaaaacttgaggaggtgggggaaatggattttccccttgggcttttaag 260
Query: 61 atgacagtcttgattttagttcactaaaacctaggccagactttcagaaccataggataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacagtcttgattttagttcactaaaacctaggccagactttcagaaccataggataa 320
Query: 121 gaaatgtatttaaagccactaagttgcatgtagcacccttaagaaagagaccatacattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatgtatttaaagccactaagttgcatgtagcacccttaagaaagagaccatacattg 380
Query: 181 gaggttaaaatacatgggaagttaaaacaaatagtcccaggacaacaagacaagggtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggttaaaatacatgggaagttaaaacaaatagtcccaggacaacaagacaagggtctt 440
Query: 241 gcttcctattttactttgtccatagcagacatgtgatcttccacaaaggcattcttttgt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcctagtttactttgtccatagcagacatgtgatcttccacaaaggcattcttttgt 500
Query: 301 cagcctcagtgctctcatccgtaagatatgtggagccatcacagcttatcagagcttctg 360
|||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 501 cagcctcagtgctctcatccataagatatgtggagctatcactgcttatcagagcttctg 560
Query: 361 agaaaactatatgttacacacacacacacacacacacacacacacacacacacacacaca 420
| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 aaaaaactatatgttacacacacacacacacacacacacacacacacacaaac------- 613
Query: 421 caaatttcttgattctaaggttagtaatactttctcagtgttacaaccatgaacttgaca 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 614 -----ttcttgattctaaggttagtaatactttctcagtgttaaaaccatgaacttgaca 668
Query: 481 tgagaaaaacaacataaggagggctgctgagttaatggagttcattgtccgtgttacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 669 tgagaaaaacaacataaggagggctgctgagttaatggagttcattgtctgtgttacaaa 728
Query: 541 atgttttgtaaagattcacatttgccagggcatgatgggacattcttttaatcccagcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atgttttgtaaagattcacatttgccagggcatgatgggacattcttttaatcccagcat 788
Query: 601 ttgggaggcagagcaggtggacctcagagctcaaggccagcctgctcca 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttgggaggcagagcaggtggacctcagagctcaaggccagcctgctcca 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
