Query= MSMg01no483_b11.b1 MSMg01no483_b11.b1 CHROMAT_FILE:
MSMg01no483_b11.b1 PHD_FILE: MSMg01no483_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:10 2005
(589 letters)
>mm_chr11_46399797_46400785
Length = 989
Score = 1065 bits (551), Expect = 0.0
Identities = 578/589 (98%), Gaps = 4/589 (0%)
Strand = Plus / Plus
Query: 1 gatagcccctatcttgttaccatagtgtccagtgatgtgtcagccatgtgatttcccaac 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatagcccctatcttgttatcatagtgtccagtgatgtgtcagccatgtgatttcccaac 260
Query: 61 cattctgtctgatctggtacagaaggagcaatgctgaatgatagattttgcttttgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctgtctgatctggtacagaaggagcaatgctgaatgatagattttgcttttgaaag 320
Query: 121 ctaaattgaatgagttggcttgattttctttttcagttttacttcatggtttcctaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaattgaatgagttggcttgattttctttttcagttttacttcatggtttcctaattg 380
Query: 181 aatgcctattggagtataagattatgaaaatggtagatgcctgccagtgaatgttatgat 240
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcctattggaatacaagattatgaaaatggtagatgcctgccagtgaatgttatgat 440
Query: 241 tatgttcttgcacagcaaccaaacttggttcctaggacccatggcatagggctcacaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgttcttgcacagcaaccaaacttggttcctaggacccatggcatagggctcacaact 500
Query: 301 ccatctccaggagaatagcagatgtttatgtgcacctgtactgatgtgcacacacacaca 360
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 ccatctccaggagaatagcagatgtttatgtgcacctgtattcatgtgcacacacacaca 560
Query: 361 cacacacacacaactatatatacataacctaaaataaatctttaaaaacaactaggggca 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacaca----actatatatacataacctaaaataaatctttaaaaacaactaggggca 616
Query: 421 cccatgttatgcacatgcataattcaagcaaaacacgcacacaaaataataaattttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cccatgttatgcacatgcataattcaagcaaaacacgcacacaaaataataaattttaaa 676
Query: 481 aaattgaagtcagaaggcatgtaaattaatagacagatccttttaggagctttctggcaa 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 677 aaattgaagtcagaaggcatgtaagttaatagacagatccttttaggagctttctggcaa 736
Query: 541 gcactgtgagaatgataaaggggtgtggtgagctgtgtgagtgagcccc 589
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 737 gcactgtgagaatgatagaggggtgtggtgagctgtgtgagtgagcccc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_b11.g1 MSMg01no483_b11.g1 CHROMAT_FILE:
MSMg01no483_b11.g1 PHD_FILE: MSMg01no483_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:10 2005
(578 letters)
>mm_chr11_46562813_46563790
Length = 978
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%)
Strand = Plus / Minus
Query: 1 aactgagtaactagatgagatctaccatgttgtaagcaccttgctggttgcttgaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aactgagtaactagatgagatctaccatgttgtaagcaccttgctggttgcttgaaatcc 539
Query: 61 ttttacttttgcatttacatgtttgagaagagcacttgagtccatcccaaacatcagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttttacttttgcatttacatgtttgagaagagcacttgagtccatcccaaacatcagagt 479
Query: 121 ttgagttgtggttccctgttgaagccacccctgtgaagatcctgcagggagactgtggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgagttgtggttccctgttgaagccacccctgtgaagatcctgcagggagactgtggag 419
Query: 181 ggatagaacagattgtttcaagagccataacaaactttaattctcaaatgtctcctcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggatagaacagattgtttcaagagccataacaaactttaattctcaaatgtctcctcagt 359
Query: 241 atttatttataccaacccctgcatctcacctaacatccttgtgacagtcagaacaacttc 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtcatttataccaacccctgcatctcacctaacatccttgtgacagtcagaacaacttc 299
Query: 301 tgacatgtacggttacattttcacactgctagcttcctccaaccctgaagctaagacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgacatgtacggttacattttcacactgctagcttcctccaaccctgaagctaagacttt 239
Query: 361 tagacgatctgaaatctgcagaagggatttctagtgaagtggtggtggccatgcctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagacgatctgaaatctgcagaagggatttctagtgaagtggtggtggccatgcctttaa 179
Query: 421 tcccagctctatgaaggaacaggcaggcagatctctgtgagtttgaggtcagcctggtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tcccagctctatgaaggaacaggcaggcagatctctgtgagtttgaggtcagcctggtcc 119
Query: 481 tcagagtgagtcagtcagggatacagagagaaatcctgtctcaaacaaaacaaaacaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tcagagtgagtcagtcagggatacagagagaaatcctgtctcaaacaaaacaaaacaaaa 59
Query: 541 caaaacaaaacaaa 554
||||||||||||||
Sbjct: 58 caaaacaaaacaaa 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
