BAC Information

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BAC

Clone NameMSMg01-483D13
Chromosome11 (Build37)
Map Location 36,268,827 - 36,269,475
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483D13.T7 (MSMg01no483_d13.b1)MSMg01-483D13.TJ (MSMg01no483_d13.g1)
ACCAG563200AG563201
length1,599782
length of high quality
(start - end)		---649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no483_d13.b1 PHD_FILE: MSMg01no483_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:21 2005CHROMAT_FILE: MSMg01no483_d13.g1 PHD_FILE: MSMg01no483_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGCATCCGAGCGCGACCNCNATTATTATATATATTTTNATCGAATAAT
GGACACACTACTTTCCCTACGAGAGAATGTGCGNATNGNGCANATATATC
ATCCCTTCTATCTCTCCGCTCCAGACGTCCNGCGAGCCGTTNGCACTCCG
NCTCCTGCTCGNCCANTGGATGTATATTGCTAGGCGTAATGACCGCACAC
TCAGGCTCGTAGTGCTTANTCAGTATTATCGTATACCTCTCTGCACNCAC
TCTACGCACGCAGCACTACGAGNCTTACAGGCGGACTGATGGACAACGTT
ACACGAGTACGACTGCCTCTCCGCAGTCAAATTATTCATAAGGCTATATA
CCACATTCGTACTTTATTTCGTCGCTGTGATACACTATATTCTGCTGCCG
TGCTCCTCTTCTGTACTCACTGTGCTCTCCTTCTCTCTTTTTTCTCGACT
GCTCTTCTCTCTCATCCTCGTATTCCGCCTGGCGTCGATCTCTCTCATAT
GGTATGTATCTCTGTTACTCTCATTATTGTCATGCACCCGAGCGTCGTCA
TTTACACGGATATGCTATGTGTGCACTATATGTATAGCACACTTTCTATC
AGCTATCTATTATACTCCTCGTTANTGTGTTTTCGCAACCGCCGTTTGCG
ACCGCCGCATACCCGTATAGAACAACACACACCACTCCGCGCTCGAACTC
TCGCCCTATACTCTCGACGATCATAAGAGACACACAAAGCAGCACATCGC
GCGTNTCAGCTGCCGATGCAGACGTCGCATGCGATTTCACTCGGCAGGCG
AGTGACTGATACATACACTCGTCGTACGCACCACTGATAAATACTGTCTC
TAGTGCCCGCGCGCAGATATGTCGTCTNTGTCACCGCGGACCTATTATCA
CCACTCACGCATGCACTAGTGTTAGAGCGTGTCATCATATTCTCTATCAC
TATCCGCAGTCGTCACNCGACAACAGCNCAGCACTGTAGTATATAGCGCG
ACATCCGGTCGAATGACTCATAACGGTGAACGACCACTATGTCACCCCAG
CACGCACCGGACGAGNTGTGTAGTGCCATACGCTATCTANCACACTCGCG
AGTGGCCGCAGAAAGATTAAGACAGATGCTGCTCTATATTATGTGACGAC
GAGCTATTGCAAACTCGATGTGCGTCGATACAGAATCGTCCCTGTATCTC
CGATCTAAGCCGTCTATTTCTATACTATGATATGTTCATGCATCAGCATA
CATATATGAGCACTATCCATCTTGACGAAGAGCATGTCACGTCGAGGGAT
AACTGATGAGAGAGCATATATATAGACAAATATCGATGGATCGTGTGTAA
CGCTACNCGCGAGATATCANATAGCGTAACAACCTAANCGCGTATTATCT
CTCTCCTATACGCCATTATCCACGCGACGCTCGTCCCTCTGCTCTCTGTC
GTAAGATCTACTCATCTCTTGCACGCGTCGATGNCTCGTATACTATTTGT
ATCGACGAACACACATCCCTACTCATTCACNCTAGCTAATTNCATACTTC
CACCGCTTATCAATAAACATACTCGCACGCCGCCATCTCACATCATAAG

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGACTAGGTTCG
AACTCAGAAATCCACCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGTA
TGTGCCACCACTGCCCAGCTCACGTAGACTCTTGTAGGAATTTGATCTTC
GTCCAAAGAACAATGGCTCACAGAGGTCTTTCAGGGGGAGAGGTGCACAA
AGAACATAGGCCAAGAGAGGAAGAGGGCTTATTAGATAGGTGTCGGCCCT
GGCTGAGATGAGACGATGATATCAGTTGAGACAAAAACAGCCTCTTTACA
GGTACCCTTATTTCTGTTTCTGTTTTCTAGAGAACAATGCTTCCTTCCCA
TTAACTCCACTGGCACCCATAGTATCTCTCTTAGCGCTGTTCTCTGCTTT
GTTGGTAAAGTCACAGGTGGTTGTGAGCTACCCCATGTGGCTTCTGGGAA
CCAAACTCAGGTCTTCTGTAAGAACAAGCAGCTGCTCCTAACCACGGAGC
CATCTCTCCAGCAATGCCCCTCCCAAGTACGTTCTTATTCATATACACAT
GTCTGCAGTACTGGCCATCCTAATTCTAAAAAAAAAAAAAAATTCTCTTC
ATTTTATTGCTATCATTGAATGGAATCTGGTATAACTGAGGTTTTCCTGG
AAATCCTGATCCTCTGCCTCTGCCTCCCAAGTGCCGAGATTATAGGCTTG
CACCACTATGACCTGCCCTAGCTAAAGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_d13.g1 MSMg01no483_d13.g1 CHROMAT_FILE:
MSMg01no483_d13.g1 PHD_FILE: MSMg01no483_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:21 2005
         (649 letters)



>mm_chr11_36268627_36269675
          Length = 1049

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccagactaggttcgaactcagaaatccacctgcctctgcctccctagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccagactaggttcgaactcagaaatccacctgcctctgcctccctagtgc 260

                                                                       
Query: 61  tgggattaaaggtatgtgccaccactgcccagctcacgtagactcttgtaggaatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtatgtgccaccactgcccagctcacgtagactcttgtaggaatttgat 320

                                                                       
Query: 121 cttcgtccaaagaacaatggctcacagaggtctttcagggggagaggtgcacaaagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcgtccaaagaacaatggctcacagaggtctttcagggggagaggtgcacaaagaaca 380

                                                                       
Query: 181 taggccaagagaggaagagggcttattagataggtgtcggccctggctgagatgagacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggccaagagaggaagagggcttattagataggtgtcggccctggctgagatgagacga 440

                                                                       
Query: 241 tgatatcagttgagacaaaaacagcctctttacaggtacccttatttctgtttctgtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatatcagttgagacaaaaacagcctctttacaggtacccttatttctgtttctgtttt 500

                                                                       
Query: 301 ctagagaacaatgcttccttcccattaactccactggcacccatagtatctctcttagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagagaacaatgcttccttcccattaactccactggcacccatagtatctctcttagcg 560

                                                                       
Query: 361 ctgttctctgctttgttggtaaagtcacaggtggttgtgagctaccccatgtggcttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgttctctgctttgttggtaaagtcacaggtggttgtgagctaccccatgtggcttctg 620

                                                                       
Query: 421 ggaaccaaactcaggtcttctgtaagaacaagcagctgctcctaaccacggagccatctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaccaaactcaggtcttctgtaagaacaagcagctgctcctaaccacggagccatctc 680

                                                                       
Query: 481 tccagcaatgcccctcccaagtacgttcttattcatatacacatgtctgcagtactggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccagcaatgcccctcccaagtacgttcttattcatatacacatgtctgcagtactggcc 740

                                                                       
Query: 541 atcctaattctaaaaaaaaaaaaaaattctcttcattttattgctatcattgaatggaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcctaattctaaaaaaaaaaaaaaattctcttcattttattgctatcattgaatggaat 800

                                                            
Query: 601 ctggtataactgaggttttcctggaaatcctgatcctctgcctctgcct 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctggtataactgaggttttcctggaaatcctgatcctctgcctctgcct 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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