Query= MSMg01no483_f13.b1 MSMg01no483_f13.b1 CHROMAT_FILE:
MSMg01no483_f13.b1 PHD_FILE: MSMg01no483_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:31 2005
(572 letters)
>mm_chr11_83399098_83400071
Length = 974
Score = 975 bits (504), Expect = 0.0
Identities = 565/598 (94%), Gaps = 26/598 (4%)
Strand = Plus / Minus
Query: 1 aaatcaccccctgagattggaaagaatataagccacattaaggtcccctatta------a 54
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 909 aaatcaccccctgagattggaaagaatataagccttattaaggtcccctattaaaaaaga 850
Query: 55 aaaaaaaaaaa--ctcaccaaaaagtcatgtgggctctcaactctatctac--------- 103
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaaaaaaaaaagcctcaccaaaaagtcatgtgggctctcaactctatctacatagagata 790
Query: 104 ---atc---ccctc-cttctgctcagcagccctgaactctgaagaagtggtggatgaaca 156
||| | || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 789 gatatctatctatctcttctgctcagcagccctgaactctgaagaagtgatggatgaaca 730
Query: 157 gccatgccaggtggtggcctcccccaccccttctcccctggcccatcaaggcagcatcct 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gccatgccaggtggtggcctcccccaccccttctcccctggcccatcaaggcagcatcct 670
Query: 217 acatgatgcctttgtaaccataggccagtcacctcaccaactcatggctttcctact-cc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 669 acatgatgcctttgtaaccataggccagtcacctcaccaactcatggctttcctactccc 610
Query: 276 caaccc-cttccaaactggagatagaaccccctgcttctctttcctttgacccacataac 334
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catccctctgccaaactggagatagaaccccctgcttctctttcctttgacccacataac 550
Query: 335 tacactctccaagaacctgccaaggaaatggaggaagagcctcataaccccctggcctcc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacactctccaagaacctgccaaggaaatggaggaagagcctcataaccccctggcctcc 490
Query: 395 tctctccaggcaagagaggagagtgtgtgtgctgatccctcagctggctcctccttctcc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctctccaggcaagagaggagagtgtgtgtgctgatccctcagctggctcctccttctcc 430
Query: 455 tcggcttgtgacctcaccaggagtttggagccctggacattctcagttgatgaccacctc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcggcttgtgacctcaccaggagtttggagccctggacattctcagttgatgaccacctc 370
Query: 515 acctgggctggatcctcacaaagtcaaatcacctttttgaacagtttttttccatagt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acctgggctggatcctcacaaagtcaaatcacctttttgaacagtttttttccatagt 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space: 541768
Effective search space used: 541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_f13.g1 MSMg01no483_f13.g1 CHROMAT_FILE:
MSMg01no483_f13.g1 PHD_FILE: MSMg01no483_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:31 2005
(568 letters)
>mm_chr11_83226288_83227255
Length = 968
Score = 1071 bits (554), Expect = 0.0
Identities = 566/572 (98%), Gaps = 4/572 (0%)
Strand = Plus / Plus
Query: 1 agaagacatctgataagtgtttaatgtgtgccggcccctgcactgggcatcaggacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagacatctgataagtgtttaatgtgtgccggcccctgcactgggcatcaggacagaa 260
Query: 61 tggtcagcaaaatcagatatggaaatttgctttcaaggaactcatagtctggcaagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcagcaaaatcagatatggaaatttgctttcaaggaactcatagtctggcaagaaaa 320
Query: 121 gactaatgtagcaggcagttattatacaatgtaatgaatgttgcctttggaggagatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactaatgtagcaggcagttattatacaatgtaatgaatgttgcctttggaggagatgga 380
Query: 181 gctgaagcagttataaaatgtaatgaatgttgcctttgaaggagaccagggaactgaagc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaagcagttatacaatgtaatgaatgttgcctttgaaggagaccagggaactgaagc 440
Query: 241 agcaatggttggaaggatctaacccactcgggaatatggggtcatggaaggtgatgtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatggttggaaggatctaacccactcgggaatatggggtcatggaaggtgatgtctt 500
Query: 301 acaaagtaggagcaggggaagaggagaagaggacactaattgcccgttcatactccactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaagtaggagcaggggaagaggagaagaggacactaattgcccgttcatactccactc 560
Query: 361 tgccagccatggcctcatggacagactgagacctgagaaagagtattctcagcaactctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccagccatggcctcatggacagactgagacctgagaaagagtattctcagcaactctg 620
Query: 421 gagaccccaatcagatcttttgccccagggctttttcttccaggtaccctattccccagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaccccaatcagatcttttgccccagggctttttcttccaggtaccctattccccagc 680
Query: 481 ctcaggactgcttctagtccccttgcagttaaatgtaaaggtccccattacctgcatccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcaggactgcttctagtccccttgcagttaaatgtaaaggtccccattacctgcatccc 740
Query: 541 ccaggtaccttccccccc----agcttttaga 568
|||| ||||||||||||| ||||||||||
Sbjct: 741 ccagataccttcccccccccccagcttttaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
