BAC Information

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BAC

Clone NameMSMg01-483I24
Chromosome11 (Build37)
Map Location 120,451,572 - 120,452,162
singlet/doubletsinglet
Overlap genenone
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371
Downstream geneThoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483I24.T7 (MSMg01no483_i24.b1)MSMg01-483I24.TJ (MSMg01no483_i24.g1)
ACCAG563462AG563463
length785769
length of high quality
(start - end)
595 (46 - 640)564 (76 - 639)
definitionCHROMAT_FILE: MSMg01no483_i24.b1 PHD_FILE: MSMg01no483_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:48 2005CHROMAT_FILE: MSMg01no483_i24.g1 PHD_FILE: MSMg01no483_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATAATTGCGGCGCTAAACGACTACTATATCGAGAAGAGCGCGGAA
TTCTTATGTTTCCACTTGAGGCTCAAGCTTTTGCCCCTATGTTACTACTA
CACACAAAACTCGAAGTCATCCTCTACTATACATGGAGTTCAAAGCCGGC
CTGGCCTATGAGTCTCTCAAAAAAAAAAAAAAAAAAAAAAACATCAAAAA
ACCTAAAACCTTGGGGAGATGGCTCTCAGTGAAGTGCATGCATACCACAC
AAGTGTAAGGACCTGAATCAAGGGTCCTCAGCACACAAGATGGCTCAGGA
GGTAACTATACTTGCCACCAAACGTAGAGCAATGAATTTAAACCTGGGAC
CAAGTTTTCTCTGGGGTCCACACGCACACGGTGGCACATGTGTAGCACCT
CCTCCAAGTAAGCGCAATTTTAAATAAAAGTCACACATTCAGGAGACAGA
TGTATAAAGATCTGTGAATTCCAGGATGCCAGGAATACATACTATGATTA
TCTTTCAAAATTAAAAGACAGGGGGCTATAGAGATGGCTCAGTGAGATTA
TCTTGAAAAAGACCCAGGTTCAGGTCACAGCACCCACATCATGGCAGCTC
ACAACCATCCATAATTCTAGTTCCAGAGAATTTTTTTTCTGACATCCACG
GGTGGCACATGTATGTATATGCATCCTACTTTCATCTTTATGTAATTAAA
AATAAATTCTAGACAAAAAAGATAGGCATGGGCACTTTTTTATTTTTGAG
ACAAGACTTTCTATGTAGCTTGGCTGACCAGGACC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACACACACACACACACTCTCTCT
CTCTCTCCCTCTCTCTCTCTCTCTCCAGGCACGAGCTTAGGTCGTTCACA
GATAGGCTGACAGGTCTGGATCACGAGGAACTGTCCAGCCTGGCAGGCAG
CCCACGCATGCAGCCTCACTGCGCATGCTCGGGCAAGGCAGTAAACAAGT
GGGTTTGATATGGCCTGCGGCCGCACCCATTTACCCTGCAACCTCCAAGA
GGTTTAGACCAACTAAACCTCTTGAAAGAGATACTCTCCCACCTGTTGAG
CTGCATTCAGGCTATGAATTGTGCTCCGGGTTCCCAGCCTTTGTGAACTG
TCACTGGAGCTGACCCACACCGAATGCCATCTGATCCTGTAAGAAATTCC
TCACCAATACTCCCATAGGTAACCCCAATAAATCTCATGGCTCACCAAGC
TGGACTTCCGGTGGTGTCTGTACACTGGTCTTTTATGGGCTACCTAATGG
AGAGTGTGGATATGCATGTTGTGTCTCTCCAGGAAAAGTTTTGTCGAACA
ACAGAAGGAAAGGCCTTTGGGAGGAGTTTAGGGGAAACTAGACCCAGCAA
GACAACTGACATTGACCTTTTGGGCTCCAATCATGAGTGCACACACGTGC
ATCTGGCAGCAGACATGCTCACACCTGTGCAGATACCCACAGACATTAAA
AACAAGTGTCGGGGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_i24.b1 MSMg01no483_i24.b1 CHROMAT_FILE:
MSMg01no483_i24.b1 PHD_FILE: MSMg01no483_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:48 2005
         (595 letters)



>mm_chr11_120451368_120452362
          Length = 995

 Score = 1071 bits (554), Expect = 0.0
 Identities = 583/594 (98%), Gaps = 4/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttatgtt-tccacttgaggctcaagcttttgcccctatgttactactacacaca 61
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatgttatacacttgaggctcaagcttttgcccctatgttactactacacaca 264

                                                                       
Query: 62  aaactcgaagtcatcctctactatacatggagttcaaagccggcctggcctatgagtctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaactcgaagtcatcctctactatacatggagttcaaagccggcctggcctatgagtctc 324

                                                                       
Query: 122 tcaaaaaaaaaaaaaaaaaaaaaaacatcaaaaaacctaaaaccttggggagatggctct 181
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||
Sbjct: 325 tcaaaaaaaaaaaaaaaaaaaaa---atcaaaaaacctaaaaccttggggagatgactct 381

                                                                       
Query: 182 cagtgaagtgcatgcataccacacaagtgtaaggacctgaatcaagggtcctcagcacac 241
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtgaagtgcatgcataccacgcaagtgtaaggacctgaatcaagggtcctcagcacac 441

                                                                       
Query: 242 aagatggctcaggaggtaactatacttgccaccaaacgtagagcaatgaatttaaacctg 301
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagatggctcaggaggtaactacacttgccaccaaacgtagagcaatgaatttaaacctg 501

                                                                       
Query: 302 ggaccaagttttctctggggtccacacgcacacggtggcacatgtgtagcacctcctcca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaccaagttttctctggggtccacacgcacacggtggcacatgtgtagcacctcctcca 561

                                                                       
Query: 362 agtaagcgcaattttaaataaaagtcacacattcaggagacagatgtataaagatctgtg 421
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agtaagtgtaattttaaataaaagtcacacattcaggagacagatgtataaagatctgtg 621

                                                                       
Query: 422 aattccaggatgccaggaatacatactatgattatctttcaaaattaaaagacagggggc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 622 aattccaggatgccaggaatacatactatgattatctttcaaaattaaaagacagggggg 681

                                                                       
Query: 482 tatagagatggctcagtgagattatcttgaaaaagacccaggttcaggtcacagcaccca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatagagatggctcagtgagattatcttgaaaaagacccaggttcaggtcacagcaccca 741

                                                                 
Query: 542 catcatggcagctcacaaccatccataattctagttccagagaattttttttct 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 catcatggcagctcacaaccatccataattctagttccagagaattttttttct 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)