Query= MSMg01no484_b17.b1 MSMg01no484_b17.b1 CHROMAT_FILE:
MSMg01no484_b17.b1 PHD_FILE: MSMg01no484_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:32 2005
(645 letters)
>mm_chr11_38442406_38443450
Length = 1045
Score = 1218 bits (630), Expect = 0.0
Identities = 642/646 (99%), Gaps = 2/646 (0%)
Strand = Plus / Minus
Query: 1 tattttttaaaaattacatttattgacaaca-ttttttgacaatttcatatgtgtattac 59
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 675 tattttttaaaaattacatttattgacaa-atttttttgacaatttcatatgtgtattac 617
Query: 60 ttgtactctggtactattattttacccttccttatctcaccctcaactctaatttacccc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgtactctggtactattattttacccttccttatctcaccctcaactctaatttacccc 557
Query: 120 tcctgtctatgggttcctttcccacttttatgttttgttctgtttagtgacctactgatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcctgtctatgggttcctttcccacttttatgttttgttctgtttagtgacctactgatt 497
Query: 180 gcaactagaatggtctgtgtctccatcattttagaactaaccattagaaccttgtaggct 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 gcaactagaatggtctgtgtctccatcgttttagaactaaccattagaaccttgtaggct 437
Query: 240 tagtatttggtaaacaatgaaggcaataattaaagcccttactgcagattctatcactca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tagtatttggtaaacaatgaaggcaataattaaagcccttactgcagattctatcactca 377
Query: 300 ctagaagtgtaacagggagtgatgggttccataaacccttctttgattcataattggtaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctagaagtgtaacagggagtgatgggttccataaacccttctttgattcataattggtaa 317
Query: 360 ttgatattcttagatttcagcaagtccagtgcagataaacatagcagtattgaaatcatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttgatattcttagatttcagcaagtccagtgcagataaacatagcagtattgaaatcatg 257
Query: 420 attataatgactacaatatgccccccaaacagcattttctatactttctgcctgtctttt 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 attataatgactacgatatgccccccaaacagcattttctatactttctgcctgtctttt 197
Query: 480 aattattaaaattttttctggcccctctgtttaaattacatatatttaaattagctacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aattattaaaattttttctggcccctctgtttaaattacatatatttaaattagctacca 137
Query: 540 aagcaatggttctccatatggctttttcttagatccttcactttggttaactctcttccc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aagcaatggttctccatatggctttttcttagatccttcactttggttaactctcttccc 77
Query: 600 tagtccagttcccttatttcccctacgtgaatctatccatcaccag 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tagtccagttcccttatttcccctacgtgaatctatccatcaccag 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_b17.g1 MSMg01no484_b17.g1 CHROMAT_FILE:
MSMg01no484_b17.g1 PHD_FILE: MSMg01no484_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:32 2005
(663 letters)
>mm_chr11_38312523_38313583
Length = 1061
Score = 1178 bits (609), Expect = 0.0
Identities = 648/663 (97%), Gaps = 9/663 (1%)
Strand = Plus / Plus
Query: 5 aaaaggtccattagaaactgaaagctgaaaacactgtatagtagtcatagtgccctagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaaggtccattagaaactgaaagctgaaaacactgtatagtagtcatagtgccctagtt 263
Query: 65 ctttacagtcaggtaagtaacaagcaggaaaccatggatatgccacaatttctaagccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttacagtcaggtaagtaacaagcaggaaaccatggatatgccacaatttctaagccag 323
Query: 125 gggctcaagaaatgcagggtgagacacatattgagatcctgtcctctaacaaaacagaca 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggctcaagaaatgcagggtgacacacatattgagatcctgtcctctaacaaaacagaca 383
Query: 185 gacaaacaaacaaa-caaaacaaaactttctatatttcacgcagaaaagaaaagaaaaaa 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacaaacaaacaaaacaaaacaaaactttctatatttcacgcagaaaagaaaagaaaaaa 443
Query: 244 ggaagcaaaagaaaaaaa-tcttaaactgattaaaatatgcttttagggcacagctaaat 302
|||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 444 ggaagcaaaagaaaaaaaatcttaaattgattaaattatgcttttagggcacagctaaat 503
Query: 303 atactaagattaagaacataaggaaaatacaaagctatattaaatttgaattccatatca 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 atactaagattaagaacataaggaaaatacaaagatatattaaatttgaattccatatca 563
Query: 363 ttagaattctatcagaattcacacacactgactatcaaatatttttcaacctagatcaca 422
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 ttagaattctatcagaattcacacacact----atcaaatatttttcaacctagatcaca 619
Query: 423 cattctgaagaatttttt-ctaatatttttttgaagttaacatagtggctcagttttatg 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cattctgaagaatttttttctaatatttttttgaagttaacatagtggctcagttttatg 679
Query: 482 aagatgttgtatgtaaaataaatgttatttataaagaac-aatgcaattagtagaaaggt 540
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 680 aagatgttgtatgtaaaataaatgttatttataaa-aagtaatacaattagtagaaaggt 738
Query: 541 gtgtttttccatcatttgtttgtaagttttcacaactcccagcataagcaataaaaacta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtgtttttccatcatttgtttgtaagttttcacaactcccagcataagcaataaaaacta 798
Query: 601 atttttatagacctgtattatagttcaaaggaaaggactatgcacaaaaagaaatacctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atttttatagacctgtattatagttcaaaggaaaggactatgcacaaaaagaaatacctg 858
Query: 661 aga 663
|||
Sbjct: 859 aga 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1061
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1051
Effective search space: 686303
Effective search space used: 686303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
