BAC Information

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BAC

Clone NameMSMg01-484D24
Chromosome11 (Build37)
Map Location 25,746,457 - 25,747,130
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484D24.T7 (MSMg01no484_d24.b1)MSMg01-484D24.TJ (MSMg01no484_d24.g1)
ACCAG563984AG563985
length7651,286
length of high quality
(start - end)		701 (47 - 747)---
definitionCHROMAT_FILE: MSMg01no484_d24.b1 PHD_FILE: MSMg01no484_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:44 2005CHROMAT_FILE: MSMg01no484_d24.g1 PHD_FILE: MSMg01no484_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCCAAACTTGCTGATTAAAACACTAAGCATTCAAGCTTTTGCC
ATGGAGCACAGCCATTCTGTATTGCAGCATTGTTGTTTGGCCGACAGTTA
TGTTGTTCTGTGCATTAAATGTTTAGCAATAGCTCAAGATTATTCTTACT
TGGTGTTAAGTAGAACAACCCTGTCCTTTTCAGTCAGGATGAATCAAAAT
ATCCCTAGACGTGGTCACATATCACTAGGACATAGATAAGACAAAAGAGC
CTTTATAAACAACAGGCAAGAACAAGTAAACAATATGTTTATATCCAAAT
GTAAACAACATGTTTATATCCAAATGTATACAACAATGATGAGTGGTGAC
CTGCCACTGAGGACCAAGGAAGAGAGGAGACACAGGAAGTAGTTAAGACA
AGAAAAACCTTGTAACACTGAAGAATGAAACCTGGGATGAAGATATAATT
GTTATAATTTTCTATTCCACTAATACCATAGTATCAACTTGTAAAATTAT
GATATGCAAAGAAAAATAGAAACAGCAGTTGTTCAACTCATTGTCTGAGG
GGTAAAACGTAAACCATGAAATTCTAATTCATACAAATAGAAACATTGTT
CCCTAATAACCAGGAACTTATTAGTTCCCTAATAAGCAAGAACTCTTGCT
GCTTTAAGCACCTGAAAAAAACGCACCTGCACACACACGTAAACAGCAAA
ACACAGCCTGCTCTT

CCGTCTAGCTAACTTATTTGAGATCGGTGGCGAGATGGGTGAATTTCTCT
TAAGGGGGAGGAGGGACACGATCACATTAGATTGCTTTTCCAGTCCAATT
ATTCTCTTCTTCCCTACTGCTTCCTCGCGGACCAAAGGGTGTGTAAGCGC
GTTGTGTCACACGACATACAACGAGAGCAGAGTACAGTATCACGGAGGTG
AACGTAACGAGTCGGCGCGACCGATTTTTCCGCCATTGAGACCGTTGGGG
TTAGCGCATCGTAACAGGGCGTGAGGCCGTTGACGTCTTGTGTCATGACA
TACTCTACTATAACTCCCTGTCGCGGTACTATAGGCGCCCACTCTCGGCG
ATATAACCCGCACACGGGCAGTGGGATAGGTTGAATTGTGCACGCCATAC
GAGACGTTGTCATTAGCGGGAGGAGAGTGAAGGACGGCCTGCGGGTGGGC
TGCGCGTGATCGAACGGAATGCAGCGCAGTGTGATATTGAGAGGTGTACA
CGGTAGATGGGACACGTATTCATCTCGAGTTTCGATTTGTGCTCGATGTT
GAATCGGAGTGATGAGGGAGCCCACGCGCGTAGACCAACAGAGAGGACGC
AGATCGTCGTAGTTATTGATATAGTGAGTAGCGTCGCACTATATTTTAAC
TACACGCCTGACGTACAGTGGTGACGATGTGATTATACTAGATTAAAGCT
ACGGATACCCCAGACGCATAGGAGGTAGAGGGCGGGATAGTGTCTACGTG
ACTCGGTACGATACGGTTATTTATGTATACTACGATTGCGACATCGTATT
TGTTCATATTCTATCGATCACGCGCCGTGCGGGCGCATCCACGCTTACGT
ATATCAATGGTGAGACGTCATCTCCGACAGCGGATGGATACGATATGCCG
CCGCGCNCACGAGACAGGATAGTGGGACTGAGCGGGATATAAGATTTTGA
CGTGACGAACGCACTCGGGCGGCCCGTTTATATATTTATGATCATTATGT
GAGGAGCGGCGTTACGGCTCATCTATCACATTGGTCATTCGACTGTGCTC
GCGTGCAATGTCGAGGGAGNCGGATAGATNTACAGCGTATGCGCGTGGGT
TACTAGATAGTGTACTGGTATGTACATATGGACAGGGACGCACGAGTNAT
GTATAACACGCGCGTCGAGACGCGTGATTATAGTTATCTGATACGNCGAC
ACCACCCGCGCCACCGTCATGTGTAAATTATCATAGTACACACACGTGGC
GGCGTATACGGAGGTCGATATGTGATTCCGCCGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_d24.b1 MSMg01no484_d24.b1 CHROMAT_FILE:
MSMg01no484_d24.b1 PHD_FILE: MSMg01no484_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:44 2005
         (701 letters)



>mm_chr11_25746030_25747130
          Length = 1101

 Score = 1257 bits (650), Expect = 0.0
 Identities = 668/674 (99%)
 Strand = Plus / Minus

                                                                        
Query: 28   aaaacactaagcattcaagcttttgccatggagcacagccattctgtattgcagcattgt 87
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1101 aaaacactaagcattcaagcttttgccatggagcacagccatcctgtattgcagcattgt 1042

                                                                        
Query: 88   tgtttggccgacagttatgttgttctgtgcattaaatgtttagcaatagctcaagattat 147
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 tggttggccgacagttatgttgttctgtgcattaaatgtttagcaatagctcaagattat 982

                                                                        
Query: 148  tcttacttggtgttaagtagaacaaccctgtccttttcagtcaggatgaatcaaaatatc 207
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 981  tcttacttggtgttaagtagaacaaccctgtccatttcagtcaggatgaatcaaagtatc 922

                                                                        
Query: 208  cctagacgtggtcacatatcactaggacatagataagacaaaagagcctttataaacaac 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  cctagacgtggtcacatatcactaggacatagataagacaaaagagcctttataaacaac 862

                                                                        
Query: 268  aggcaagaacaagtaaacaatatgtttatatccaaatgtaaacaacatgtttatatccaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  aggcaagaacaagtaaacaatatgtttatatccaaatgtaaacaacatgtttatatccaa 802

                                                                        
Query: 328  atgtatacaacaatgatgagtggtgacctgccactgaggaccaaggaagagaggagacac 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  atgtatacaacaatgatgagtggtgacctgccactgaggaccaaggaagagaggagacac 742

                                                                        
Query: 388  aggaagtagttaagacaagaaaaaccttgtaacactgaagaatgaaacctgggatgaaga 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  aggaagtagttaagacaagaaaaaccttgtaacactgaagaatgaaacctgggatgaaga 682

                                                                        
Query: 448  tataattgttataattttctattccactaataccatagtatcaacttgtaaaattatgat 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  tataattgttataattttctattccactaataccatagtatcaacttgtaaaattatgat 622

                                                                        
Query: 508  atgcaaagaaaaatagaaacagcagttgttcaactcattgtctgaggggtaaaacgtaaa 567
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621  atgcaaagaaaaatagaaacagcagttgttcaactcattgtctgaggggtaaaatgtaaa 562

                                                                        
Query: 568  ccatgaaattctaattcatacaaatagaaacattgttccctaataaccaggaacttatta 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  ccatgaaattctaattcatacaaatagaaacattgttccctaataaccaggaacttatta 502

                                                                        
Query: 628  gttccctaataagcaagaactcttgctgctttaagcacctgaaaaaaacgcacctgcaca 687
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501  gttccctaataagcaagaactcttgctgctttaaacacctgaaaaaaacgcacctgcaca 442

                          
Query: 688  cacacgtaaacagc 701
            ||||||||||||||
Sbjct: 441  cacacgtaaacagc 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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