BAC Information

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BAC

Clone NameMSMg01-485A05
Chromosome11 (Build37)
Map Location 104,018,345 - 104,018,865
singlet/doubletsinglet
Overlap geneCrhr1
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485A05.T7 (MSMg01no485_a05.b1)MSMg01-485A05.TJ (MSMg01no485_a05.g1)
ACCAG564560AG564561
length729743
length of high quality
(start - end)		621 (54 - 674)517 (81 - 597)
definitionCHROMAT_FILE: MSMg01no485_a05.b1 PHD_FILE: MSMg01no485_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:48 2005CHROMAT_FILE: MSMg01no485_a05.g1 PHD_FILE: MSMg01no485_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAGACTATGCGGTTGCATCGACCCCCCGGTGTGGCA
CCCTGGACGCCACTGGAGACCGAGGAATCATAACAGGGGCCCTGATCCTT
AGGAGTGTTTCCTCGCTTAAGGGAAATTAGGTCCCATGATGATGATGGCT
TCCAGTATGCCTGTCCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCC
TCTCCCGGCCCTCCACACCCTATTGGTACAGTATGACCGGGGCAAACATA
GAAGTCATACAGTCTTGTCCTTTTTCTTCCCCCGGGAGAGCGGCAACCAT
CTCCATCTGGGTCATCCCAATCCCAGTAGTCTCCTACTAAATCACACAGG
TCAAAATATAGTTTAGGGAAGGTGTCTGTCATCGTCCCCAGGAGGGAGGT
GGCGTTAGCTGTTTGTCCTGTCATTAGGTTGGTAACTCTCCAAGTAACAT
TGAAGACCTGGTGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACT
AAGATCCCCATAACTATCAGGGGGCCCCACGGGTTAATCTTATCTTTAAG
GGATTTTGAGAACGCTGGACCTTCCATGCTGTTCCGGCCGGAGGAGTTGT
CGCCGCCTTTACGTGAGCGGCGTGTATCCACGCAGAGAAGNCGCCTACTT
TTGAAAACGGGGGGGGGGGGCTATAAGAG

AGGGGAGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGTCCTAGCCTGAAGCA
CTCAAGGGTCTCAAAGCCTAGGCTGCGGAAGCCTGGATTACTTTAAATTT
TTAACCCCTCTCTCTGTCTGTCTCTGTCTCTGTCTGTCTCTCACCCCCCC
CCCACGAGACAGAGAGACAGAGACAGACAGAGCCAGCCAACTACCTACAA
GCCCCTTCCTGGTCAGCCGCCGGCTGAATGGACAGGGAAGAACACCGGAG
GCTTTTAAAATGATTCTTCTTTCCACAGGATATATTTTGGTATTATTTTT
CCCTCCTCCAACTCCTCTCAGATCCTCCCCCCTCCCTACCCTCTCTCATG
TTCTCTCCCTCTCTTAACAAAAACAAAACAAAAATTCAAATACTTAACTC
ACCCAAGAAGTGGGGTGAACTGGGGACAGAAAAATGAATAAAATAGATGT
CTGGCCCCGAGGGACTTTCACCCTACTGGGAGACACAGTGAGCAAGCAGG
CAAGCATGTGCTATCCAGTGCGAAATGTTACAAGCAATGTACGGAGATGA
TGACGGACGGGGTGCTACTTTAATTTGGGATTTCTCTAAAGCACTGTTTT
ATTACAGACTTGGAGAGAGGAAGTCACGTGCATACATGGGAGAGAGGGAG
TAGCCCAGTTCAAGGTCCCCAGGAGGTGATTGCTGAGGTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_a05.g1 MSMg01no485_a05.g1 CHROMAT_FILE:
MSMg01no485_a05.g1 PHD_FILE: MSMg01no485_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:48 2005
         (517 letters)



>mm_chr11_104018327_104019243
          Length = 917

 Score =  953 bits (493), Expect = 0.0
 Identities = 513/521 (98%), Gaps = 4/521 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgtcctagcctgaagcactcaagggtctcaaagcctaggctgcggaagcctggatta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 539 tcatgtcctagcctgaagcactcaaggatctcaaagcctaggctgcggaagcctggatta 480

                                                                       
Query: 61  ctttaaatttttaacccctctctctgtctgtctctgtctctgtctgtctctca---cccc 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 479 ctttaaatttttaacccctctctctgtctgtctctgtctctgtctgtctctcacaccccc 420

                                                                       
Query: 118 ccccccacgagacagagagacagagacagacagagccagccaactacctacaagcccctt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 419 ccccccacgagacagagagacagagacagacagagccagccaactacctacgagcccctt 360

                                                                       
Query: 178 cctggtcagccgccggctgaatggacagggaagaacaccggaggcttttaaaatgattct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctggtcagccgccggctgaatggacagggaagaacaccggaggcttttaaaatgattct 300

                                                                       
Query: 238 tctttccacaggatatattttggtattatttttccctcctccaactcctctcagatcctc 297
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tctttccacagaatatattttggtattatttttccctcctccaactcctctcagatcctc 240

                                                                       
Query: 298 ccccctccctaccctctctcatgttctctccctctcttaacaaaaacaaaacaaaaattc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccccctccctaccctctctcatgttctctccctctcttaacaaaaacaaaacaaaaattc 180

                                                                       
Query: 358 aaatacttaactcacccaagaagtggggtgaactggggacagaaaaatgaataaaataga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aaatacttaactcacccaagaagtggggtgaactggggacagaaaaatgaataaaataga 120

                                                                       
Query: 418 tgtctggccccga-gggactttcaccctactgggagacacagtgagcaagcaggcaagca 476
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgtctggccccgagggggctttcaccctactgggagacacagtgagcaagcaggcaagca 60

                                                    
Query: 477 tgtgctatccagtgcgaaatgttacaagcaatgtacggaga 517
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tgtgctatccagtgcgaaatgttacaagcaatgtacggaga 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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