BAC Information

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BAC

Clone NameMSMg01-485A11
Chromosome11 (Build37)
Map Location 97,326,467 - 97,504,995
singlet/doubletdoublet
Overlap gene4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik
Upstream geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
Downstream geneMllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485A11.T7 (MSMg01no485_a11.b1)MSMg01-485A11.TJ (MSMg01no485_a11.g1)
ACCAG564572AG564573
length754739
length of high quality
(start - end)		242 (79 - 320)599 (79 - 677)
definitionCHROMAT_FILE: MSMg01no485_a11.b1 PHD_FILE: MSMg01no485_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:49 2005CHROMAT_FILE: MSMg01no485_a11.g1 PHD_FILE: MSMg01no485_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,326,467 - 97,326,705)(97,504,677 - 97,504,995)
sequence
NNGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCAAGCTGACTGCAATCCGTGGCCTCAGAACTCAGGAGC
AGCCCCCAGGAAGCAAGGGTAGGAGGGCTGGGTGCACAGTGGGTGCTTGT
GCTGGGCAGCGCCCCTGCCTGTGTGTGCCCAGGGCGCCCCAGCCTGTGTG
TGCCCAGGGCGCCCCAGCCTGTGTGTGCCCAGGGTTACTGCTGCTTTCTG
CTTTAATTGTAAGCCGATGAGGGGTCTGGAGCCTCAAGGTTTCAGGGCTG
AAAACATCTGGATTCTGGTTTGCTTCTAGAAAATTCTTGTAGGCAGCCCT
CTGTTTCTGCTTGTGTCCTTTGGGAATGAGAGGCTCACTGCAGGCAGGCC
TGCATCTTTACACTTTGGGCTATCAGGAGCCACTTCCTGGGCCAGAGAGA
CTGCCCAGCAGTAAAGAGCTTCCAGAGGGCCTGAGTTGGATTCTCAGAGC
TTACAAGTACCTGCAGCTCCAGCCTCAGGAGATCTGACACCTCTGACATC
TGTGGGCGTCAACACTCATATGCATCCCCCAGTACACACACACTCACACA
CATATACACCACTTATTTCCCCACAAAGTTATTTTGGGTTTAAACTTTTA
TAATCTTTTTTGTTTCTTTTCTATCACCCCTAAAAAAATTCCCTTCTCCC
TTTTGTTTATTGCCAAATAATTTGCCTCCTCTCTTATTCCAGTATTTGGT
TCCT

NNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGACC
CAAACTCAGAGAACAATCTTCTGAGTGCTGGGATTAAAGGCATTCCTCAG
CAAAGCTTTGAGAAAGGTTCTCAATATGTAACTTAGGGTATCCTAAAATT
TGCTGTGGAGCCCAGGTTGGCCTTTGCTTCATAGAGAGAGTCACATGATA
CTACCTCTAAGGAGTGCTGGGATTAAAGAGAAGCGTCACCATGCCACATC
TATTTGTTTTTTCAGATAAGGTCTCATGGAACCCACCCTGGCCTCAAACT
CACTGTGTAGCTACAGAATGATCCCAAGCCCCTACTGCTACATCTATAGA
GCTTGGGATTACAGATGAGCGTCACCAATTCTGGTCTTGCTCTTTGTTTT
GAGATGGGAGGAGGGGGTCTCCCTGTGTAACCCAGGCTGTCTTAGAACTC
CTGATCCTCCTGCCTCAGCTTCCCAAGTGCTCATATTATAAACATGGGCC
ATTACACCAACTAGTTACACATTTTGAAAGGACCACTAAAGCTGAAAATC
ACCAAGACTAGAAAGGTAGCAAGAGCCCTCTCCCTCCCCAACCCCCGCCC
CGGGAAGGGGTAATTCTAGAACCCTTGAGTAGGAGCAGACATTGTCCNAA
AGGGAGCAGGAGAAACAGAGCTGATGGGTCAGAGCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_a11.b1 MSMg01no485_a11.b1 CHROMAT_FILE:
MSMg01no485_a11.b1 PHD_FILE: MSMg01no485_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:49 2005
         (242 letters)



>mm_chr11_97326264_97326905
          Length = 642

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggcctcagaactcaggagcagcccccaggaagcaagggtaggagggctgggtgcacagtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggcctcagaactcaggagcagcccccaggaagcaagggtaggagggctgggtgcacagtg 263

                                                                       
Query: 64  ggtgcttgtgctgggcagcgcccctgcctgtgtgtgcccagggcgccccagcctgtgtgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgcttgtgctgggcagcgcccctgcctgtgtgtgcccagggcgccccagcctgtgtgt 323

                                                                       
Query: 124 gcccagggcgccccagcctgtgtgtgcccagggttactgctgctttctgctttaattgta 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gcccagggcgctccagcctgtgtgtgcccagggttactgctgctttctgctttaagtgta 383

                                                                      
Query: 184 agccgatgaggggtctggagcctcaaggtttcagggctgaaaacatctggattctggtt 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agccgatgaggggtctggagcctcaaggtttcagggctgaaaacatctggattctggtt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no485_a11.g1 MSMg01no485_a11.g1 CHROMAT_FILE:
MSMg01no485_a11.g1 PHD_FILE: MSMg01no485_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:49 2005
         (599 letters)



>mm_chr11_97503997_97504995
          Length = 999

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 281 agctacagaatgatcccaagcccctactgctacatctatagagcttgggattacagatga 340
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 agctacagaatgatcccgagcccctactgctacatctatagagcttgggattacagatga 940

                                                                       
Query: 341 gcgtcaccaattctggtcttgctctttgttttgagatgggaggagggggtctccctgtgt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gcgtcaccaattctggtcttgctctttgttttgagatgggaggagggggtctccctgtgt 880

                                                                       
Query: 401 aacccaggctgtcttagaactcctgatcctcctgcctcagcttcccaagtgctcatatta 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 aacccaggctgtcttagaactcctgatcctcctgcctcagcttcccaagtgctcatatta 820

                                                                       
Query: 461 taaacatgggccattacaccaactagttacacattttgaaaggaccactaaagctgaaaa 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 taaacatgggccattacaccaactagttacacattttgaaaggaccactaaagctgaaaa 760

                                                                       
Query: 521 tcaccaagactagaaaggtagcaagagccctctccctccccaacccccgccccgggaagg 580
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 759 tcaccaagactagaaaggtagcgagagccctctccctccccaccccccgccccgggaagg 700

                              
Query: 581 ggtaattctagaacccttg 599
           |||||||||||||||||||
Sbjct: 699 ggtaattctagaacccttg 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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