Query= MSMg01no485_d08.b1 MSMg01no485_d08.b1 CHROMAT_FILE:
MSMg01no485_d08.b1 PHD_FILE: MSMg01no485_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:04 2005
(625 letters)
>mm_chr11_54612971_54613995
Length = 1025
Score = 1085 bits (561), Expect = 0.0
Identities = 606/621 (97%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtccttctagcgcttaactcaggacagcaggtgtggtgaaaagctccttttcc 64
|||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 206 gaattctgtccttccagggcttaactcaggacagcaggtgtggtgaaaa-ctccttttcc 264
Query: 65 tgctgagccatctcattcgccccatgtgcttttgttttgttttattatttacaacatatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgagccatctcattcgccccatgtgcttttgttttgttttattatttacaacatatc 324
Query: 125 tcagtttaaagtatttatgttcaggggttcaatggcaacatgaagctatgggcatgagat 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagtttaaagtaattatgttcaggggttcaatggcaacatgaagctatgggcatgagat 384
Query: 185 cagccaattcaatattagacatttaaagaaatatttcaatcaaatttcttccattcttca 244
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 cagccaattcagtattagacatttaaagaaatatttcaatcaaatctcttccattcttca 444
Query: 245 ttaattttaaaataagtatacataaaggataatagaataactacagatatatgaaaatat 304
|||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 445 ttaattataaaataagtatacataaaggaaaagagaataactacagatatatgaaaatat 504
Query: 305 acatacatattcattacactctgataaagaccaaacttaagagttttttcaagccattgg 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatacatatacattacactctgataaagaccaaacttaagagttttttcaagccattgg 564
Query: 365 ttcttagttataaagactcacacttcaatcaggggaccagggtataagcaatacaccgat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 ttcttagttataaagactcacacttcaatcaggggaccagggtataagcaatacactgac 624
Query: 425 ttctgatttcaaaattcataacataaagaaataaaagcaaagaagagtggtccccagaaa 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctgatttcaaatttcataacataaagaaataaaagcaaagaagagtggtccccagaaa 684
Query: 485 ctatgaagtctcacaggagaacatatactggtctctaaaataactacttgttgactaaac 544
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctatgaagtctcacgggagaacatatactggtctctaaaataactacttgttgactaaac 744
Query: 545 atttatgaccctcacagaccttgaaataaactcttgagagcccacatgtttgtttttgtc 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atttatgatcctcacagaccttgaaataaactcttgagagcccacatgtttgtttttgtc 804
Query: 605 tcaatcaatataactagtgtg 625
|||||||||||||||||||||
Sbjct: 805 tcaatcaatataactagtgtg 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_d08.g1 MSMg01no485_d08.g1 CHROMAT_FILE:
MSMg01no485_d08.g1 PHD_FILE: MSMg01no485_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:04 2005
(524 letters)
>mm_chr11_54784570_54785493
Length = 924
Score = 890 bits (460), Expect = 0.0
Identities = 508/542 (93%), Gaps = 29/542 (5%)
Strand = Plus / Minus
Query: 1 aagaattcaaaaccagcctggaatacaaaaaactctgtcagagagagagagagagagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aagaattcaaaaccagcctggaatacaaaaaactctgtcagagagagagagagagagaga 535
Query: 61 gagagagagagagagaatagagagagagaatagagagagggagacagagacagagagcaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gagagag-----------agagagagagaatagagagagggagacagagacagagagcaa 486
Query: 121 tgagaattgctattaactgcccacaaaccacaggtctagataatctagacgaatgttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 485 tgagaattgctattaactgcccacaaaccacaggtctagataatctagaagaatgttgaa 426
Query: 181 gctgagcagccccctaaccaatcatctcttttatgaactccgccccattatgttctatgt 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 gctgagcagccccctaaccaatcatctcttttatgaactccaccccattatgttctatgt 366
Query: 241 atgcacatatactacatagattactatactattcctaggtttctttctttctttcttttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgcacatatactacatagattactatactattcctaggtttctttctttctttcttttc 306
Query: 301 gagacaaggtttctctgtgtagccctggctatcctgatactcactctgtagattaggctg 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 305 gagacaaggtttctctgtgtagccctggctgtcctgatactcactctgtagattaggctg 246
Query: 361 gcctcgaactcagaaatctgcctgtctctgcctcacaagtgctgggattaaaggcgtgta 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 gcctcgaactcagaaatctgcctgtctctgccttacaagtgctgggattaaaggcgtgta 186
Query: 421 ccaccactgcccggctattcctaggtt------------------tctctctctctctct 462
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 185 ccaccactgcccggctattcctaggtttctctctctctctctctctctctctctctctct 126
Query: 463 ctctctctctctctaaagattcatttatttattgtatgtaagtacactgtagctgtcttc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctctctctctctctaaagattcatttatttattgtatgtaagtacactgtagctgtcttc 66
Query: 523 at 524
||
Sbjct: 65 at 64
Score = 83.9 bits (43), Expect = 3e-20
Identities = 48/51 (94%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 40 agagagagagagagagagagagagagagagagagagaatagagagagagaa 90
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 112 agagagagagagagagagagagagagagagagagaga---gagagagagaa 159
Score = 58.7 bits (30), Expect = 1e-12
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 447 ttctctctctctctctctctctctctctct 476
||||||||||||||||||||||||||||||
Sbjct: 516 ttctctctctctctctctctctctctctct 545
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 448 tctctctctctctctctctctctctctct 476
|||||||||||||||||||||||||||||
Sbjct: 519 tctctctctctctctctctctctctctct 547
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 448 tctctctctctctctctctctctctctct 476
|||||||||||||||||||||||||||||
Sbjct: 521 tctctctctctctctctctctctctctct 549
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 448 tctctctctctctctctctctctctctct 476
|||||||||||||||||||||||||||||
Sbjct: 523 tctctctctctctctctctctctctctct 551
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 448 tctctctctctctctctctctctctctct 476
|||||||||||||||||||||||||||||
Sbjct: 525 tctctctctctctctctctctctctctct 553
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 448 tctctctctctctctctctctctctctct 476
|||||||||||||||||||||||||||||
Sbjct: 527 tctctctctctctctctctctctctctct 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 41
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 12
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
