Query= MSMg01no485_e05.b1 MSMg01no485_e05.b1 CHROMAT_FILE:
MSMg01no485_e05.b1 PHD_FILE: MSMg01no485_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:08 2005
(569 letters)
>mm_chr11_116536292_116537263
Length = 972
Score = 1007 bits (521), Expect = 0.0
Identities = 560/581 (96%), Gaps = 15/581 (2%)
Strand = Plus / Plus
Query: 4 ggaattctctgcattgcggctctgcttgccttcacttctgagtggactcaggttcaggtc 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcagggtggctctgcttgccttcacttctgagtggactcaggttcaggtc 263
Query: 64 ctcagggatttggttgaatataaatactctg---tttcatgagaaacctttttttggcca 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 ctcagggatttggttgaatataaatactctgatgtttcatgagaaacctttttttggcca 323
Query: 121 cttaccaggaacttcttaaaactgtcttttaaaaaaaaagttagcagcctgcttctgaac 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttaccaggaacttcttaaaactttcttttaaaaaaaaagttagcagcctgcttctgaac 383
Query: 181 ttggctggtgcctgcctgtgtgtagcgcacacagtgccttgtgatggcggctggaatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggctggtgcctgcctgtgtgtagcgcacacagtgccttgtgatggcggctggaatccc 443
Query: 241 aggactatctgataatgcttgttcctaaagtttgtagtttcgatcacttagctgccggtc 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 444 aggactatctgataatgcttgttcctaaagtttgtagttttgatcacttagctgcctgtc 503
Query: 301 tccttcaggttctttccttgtttctaggttattgccctgtagtgccagagagaaccacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccttcaggttctttccttgtttctaggttattgccctgtagtgccagagagaaccacat 563
Query: 361 agcctgctgctgctcctgcctttaatttcccaaagagtcatcagacgaccttggagtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcctgctgctgctcctgcctttaatttcccaaagagtcatcagacgaccttggagtttg 623
Query: 421 ttctgcaagaggagccagtaaggcctcgtgactgtggtcaccctcggaagcctttgacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctgcaagaggagccagtaaggcctcgtgactgtggtcaccctcggaagcctttgacag 683
Query: 481 ctagctggtgagggcgctcagtcggaggccc-----------ctgctaagccgagaaa-g 528
||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 684 ctagctggtgagggcgctcagtcggaggccctggggaggcccctgctaagccgagaaaag 743
Query: 529 catttctcacagtggatttcctggaagtcagggttggcctt 569
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catttctcacagtggatttcctggaagtcagggttggcctt 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 972
Length adjustment: 10
Effective length of query: 559
Effective length of database: 962
Effective search space: 537758
Effective search space used: 537758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_e05.g1 MSMg01no485_e05.g1 CHROMAT_FILE:
MSMg01no485_e05.g1 PHD_FILE: MSMg01no485_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:09 2005
(646 letters)
>mm_chr11_116588873_116589917
Length = 1045
Score = 913 bits (472), Expect = 0.0
Identities = 506/518 (97%), Gaps = 3/518 (0%)
Strand = Plus / Minus
Query: 129 tcacatctccgctgactagaaggagagaaaggggcaggtacccatccgtctcctccctca 188
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1045 tcacatctccgctgactagaaggagagaaaggggcaggtacccatctgtctcctccctca 986
Query: 189 cccctttcattcatcctgggccccgggagatggggtggtatcacccactggagggtgggt 248
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 985 cccctttcattcatcctgggcccc--gagatggggtggtatcacccactggagggtgggt 928
Query: 249 ctcccctcttcagtcaatcctttctggaaattccctcacagatacaactagaggttgtgt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ctcccctcttcagtcaatcctttctggaaattccctcacagatacaactagaggttgtgt 868
Query: 309 ctcctggtgattctaaatccagaatcatccggtgaggagtcatccccatattcagttaag 368
||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 867 ctcctggtggctcttaatccagaatcatccggtgaggagtcatccccacattcagttaag 808
Query: 369 cactctaaaggtgaacaagaaataatgaactggactgagtgaattggtttagggaattta 428
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cactctgaaggtgaacaagaaataatgaactggactgagtgaattggtttagggaattta 748
Query: 429 gcatggagagccagccgaggccatccttagatctcagacaggttgcagtagaaccttcga 488
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 747 gcatggagagccagccgaggccatccttagatctcagacaggtcgcagtagaaccttcga 688
Query: 489 gccccctctgcacacatccagatcctcaaaatgaagcatacctttgaaacgtttgcctct 548
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 gccccctctgcacacatccagatcctcaaaatgaagcata-ctttgaaacgtttgcctct 629
Query: 549 cctgagctacagtacgggccccttctcccggctccccagggactggccctgaactcagtc 608
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctgagctacagtacaggccccttctcccggctccccagggactggccctgaactcagtc 569
Query: 609 ctctcttcctagggaggtgtcttgtcagcatctgttag 646
||||||||||||| ||||||||||||||||||||||||
Sbjct: 568 ctctcttcctaggcaggtgtcttgtcagcatctgttag 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space: 658260
Effective search space used: 658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
