BAC Information

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BAC

Clone NameMSMg01-485P05
Chromosome11 (Build37)
Map Location 28,450,034 - 28,450,512
singlet/doubletsinglet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485P05.T7 (MSMg01no485_p05.b1)MSMg01-485P05.TJ (MSMg01no485_p05.g1)
ACCAG565272AG565273
length750733
length of high quality
(start - end)		480 (74 - 553)633 (75 - 707)
definitionCHROMAT_FILE: MSMg01no485_p05.b1 PHD_FILE: MSMg01no485_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:06 2005CHROMAT_FILE: MSMg01no485_p05.g1 PHD_FILE: MSMg01no485_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCCAACCCTCTTACCTAAAGTACGCTGGCTAAGGACCTTACAAA
ATGTGAAGAGGAAGCCAACTACTCTATTCCTATTGACACACAGAATCTCT
AAACACAATGAAATGGTTGCTGTTTTACAACATTATATGTTGCTACACCG
AAATAAAAAACTAGAATATTCCTTCCAAAGTACAGGCAATGCTCTGAACC
CACTGTTGTGTATTGATGATGAGCCAGGGTCAGGAAGCCTTCCAATTTGT
CAAGACAAGCAGATTTTTGTATTACTTTTTCAGTTGCTTAATACTGTACA
AGGACCAAATAAAAACATGACTATGACTTGAATTGGTCCTTGGGCCAGTG
GGTGTGGCCTGCCATGTCTAGAGGTTCTTGAGAAGCCACTTGAAGCCTCT
TTCAAAAAGCACAGAGCTAGTGCAGCCCTGTGTCACCAATGCTGCTTTGC
AGCATCTGATGTTGCTTTCCCTTACATAGTAAGTAAGTGTTGGCACTACT
GAGGACTTCGATCTTCCCAACTTTTCATCCAAATCTCACCTGGATTTTAT
GGTTCACAATTTAGTTTCAGAAATACATAATGATGCCAACTTAAAGATAG
ACCATTTTAGGAGGTAAACATAAACCTCATGTATCCCGGAAAGCATTGAC
TATAAAATAACCAACTATTTAATCCAATTGTAATAACAATTAACCTTGAA


NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCTAATCTGTTAGTGGTCTTTTTGTCTTATTGAGAGTGTCTTTTGCCTT
GCGGACGATTTGCAACTTTATGAGGTCCCATTTATCGATTCTGGATCTTA
CAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATA
TCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGAAG
ATAGAAATGGATCAATTCGCATTTTTCTACATGATAACCGCCAGTTGTGC
CAGCACAATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGC
TCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTAGGTTCATCTCTGGGT
CTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAATACCAT
GCAGTTCTTATCACAATTGCTCTGTAGTACAGCCTTAGGTAAGGAATGGT
GATTCCACCAGAGGTTCTTTTATTGGTGTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_p05.b1 MSMg01no485_p05.b1 CHROMAT_FILE:
MSMg01no485_p05.b1 PHD_FILE: MSMg01no485_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:06 2005
         (480 letters)



>mm_chr11_28449833_28450712
          Length = 880

 Score =  843 bits (436), Expect = 0.0
 Identities = 469/480 (97%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtacgctggctaaggaccttacaaaatgtgaagaggaagccaactactctattcctat 60
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 aagtacgctggctaa-gaccttacaaaatgtgaagaggaaaccaactactctattcctat 260

                                                                       
Query: 61  tgacacacagaatctctaaacacaatgaaatggttgctgttttacaacattatatgttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacacacagaatctctaaacacaatgaaatggttgctgttttacaacattatatgttgc 320

                                                                       
Query: 121 tacaccgaaataaaaaactagaatattccttccaaagtacaggcaatgctctgaacccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaccgaaataaaaaactagaatattccttccaaagtacaggcaatgctctgaacccac 380

                                                                       
Query: 181 tgttgtgtattgatgatgagccagggtcaggaagccttccaatttgtcaagacaagcaga 240
           |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 381 tgttgtatattgatgatgagccagggtcaagaagccttccaatttgtcaagaaaagcaga 440

                                                                       
Query: 241 tttttgtattactttttcagttgcttaatactgtacaaggaccaaataaaaacatgacta 300
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tttttatatgactttttcagttgcttaatactgtacaaggaccaaatagaaacatgacta 500

                                                                       
Query: 301 tgacttgaattggtccttgggccagtgggtgtggcctgccatgtctagaggttcttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacttgaattggtccttgggccagtgggtgtggcctgccatgtctagaggttcttgaga 560

                                                                       
Query: 361 agccacttgaagcctctttcaaaaagcacagagctagtgcagccctgtgtcaccaatgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccacttgaagcctctttcaaaaagcacagagctagtgcagccctgtgtcaccaatgct 620

                                                                       
Query: 421 gctttgcagcatctgatgttgctttcccttacatagtaagtaagtgttggcactactgag 480
           |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 621 gctttgcagcatttgatgttgcttttccttacatagtaggtaagtgttggcactactgag 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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