BAC Information

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BAC

Clone NameMSMg01-486H16
Chromosome11 (Build37)
Map Location 52,631,665 - 52,632,274
singlet/doubletsinglet
Overlap geneFstl4
Upstream genePhf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
Downstream geneLOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486H16.T7 (MSMg01no486_h16.b1)MSMg01-486H16.TJ (MSMg01no486_h16.g1)
ACCAG565673AG565674
length721761
length of high quality
(start - end)
611 (60 - 670)34 (170 - 203)
definitionCHROMAT_FILE: MSMg01no486_h16.b1 PHD_FILE: MSMg01no486_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:48 2005CHROMAT_FILE: MSMg01no486_h16.g1 PHD_FILE: MSMg01no486_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GGCGCGGATTCATTTTTTTCTCACTTCTGAAAAATCAGAAGACAAAATCA
AAGAAAGGGTTGGTCAGACCATTCACGATCCCCGCTGATGGCTCTAGGGA
ATAGTCCTCCCATGCCTCTTCCTAGCCAGTGCTTGCCAGCAATGCCCTGC
TCTGTCCTCACATGGTACTCCCCTTCTGTGTCTATAGAGGATGTTTGCAC
TGCCATTCATGGGACAAAAGCCAAAACTGATCCACTATGACTTTATCTTA
ACTTGGTATGTCTATTGTCTATAGAGATCTTATTAATTAGGTCTCTATTT
AATAGAAGGTCATGTTCACAAATTCTGGCTTATTATTTCACTATGTTATA
TTTTTTTTGTCAATCTGTATTTTTCTTTGAGAACAGAGTCTCAAAATATA
GCTGCACATTCAGCCCATAACACCAACTTATTTGAACCTGAAGCCCTCTC
ATCAATGCATCATCCAGGAACATATAATATTACCAGAGATGGCAATGCAC
TCTGAAGAACTAATGGTATTTTTAAAACTTATAGTAACAATCCAGAATAG
CTATTTTAAATTATCCTTTTAAAACCCAAAGGTCTTGGGTCCTCACTAGT
ATATCATAAAGATGAGACCCAGGTTCAGAAGGGCAACTTGTACTTAGTTC
AAGAATAATTATCATCACAAG
TCGATGCAGTGGGAAGCCTGGNGGCGCCTGTTCCAAAACTGTAGGNGAAN
NANAGAATTTCAACAAACATCACTGNAGGNGTTGAAGCTAGAGGGCGGGG
CCTGGAGCTATGGAATGCAAGCTGACTTTAGAAGCAGGAAGAACAAGAAG
ACGTTTGTCCTCAGCCGAGACTTTCCCACTGCCTCAGAAGACTCACTCTA
GGTCTGGTCGCCGAGATGATTGAGATGATAGATCGGCGTTGTCTAATCCA
CCAAGTGTGTGGTAAGCTGATCAAAACACAACAGATATGTGTGCTGGCAA
AATGGAAGTGACTTTTTATTTGAAAGATGAGCTACTGAACAATTTGGTGG
CTGATTGGGGGTGAGGGAGTATTGCATTTTTCTGTCATGTCACAAGGGGG
CACTCGCCTGCTCTTTGTGTCTCACTTCTTCGTACATTATGCAGCCTCTC
AGGAATGCTTAGCAGCACCTTCCCTGTTCCTGTTCCTGTTCCTGTTCCTG
CTCCTGTTCCTGTTCCTGTTTCCTGTTACTGGCCTAGAACCGCTATGATC
TTAATACCTTACCAGGTCATACTAAGTTTGTCCGGTAAAAAATGTGCCTT
GCTTTCTGGAGGGCAACTTGATTTTCGGTTCCCAGAATCCATGGTCACGA
TGGGTTCAAAACTACCCCTTAAACTCCAGTAACCAGCGGGGGCCCCTTTT
TCCTGATCAACCACCGGTCACCCTGCTACTCATGGTGGCACATTACTCCC
ACTCTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_h16.b1 MSMg01no486_h16.b1 CHROMAT_FILE:
MSMg01no486_h16.b1 PHD_FILE: MSMg01no486_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:48 2005
         (611 letters)



>mm_chr11_52631465_52632475
          Length = 1011

 Score = 1042 bits (539), Expect = 0.0
 Identities = 593/611 (97%), Gaps = 2/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttttttctcacttctgaaaaatcagaagacaaaatcaaagaaagggttggtcagac 60
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tcatttttctctcagttctgaaaaatcagaagacaaaatcaaagaaagggttggtcagac 751

                                                                       
Query: 61  cattcacgatccccgctgatggctctagggaatagtcctcccatgcctcttcctagccag 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 750 cattcacgatccccgctgatggctctagggaatagtcctcccacgcctcttcctagccag 691

                                                                       
Query: 121 tgcttgccagcaatgccctgctctgtcctcacatggtactccccttctgtgtctatagag 180
           ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 690 tgcttgccagcaatgccctgctctgtcttcacacggcactccccttctgtgtctatagag 631

                                                                       
Query: 181 gatgtttgcactgccattcatgggacaaaagccaaaactgatccactatgactttatctt 240
           |||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct: 630 gatgttcgcactgccattcatgggactaaagccaaaagtgatccagtatgactttatctt 571

                                                                       
Query: 241 aacttggtatgtctattgtctatagagatcttattaattaggtctctatttaatagaagg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 570 aacttggtatgtctattgtctatagagatcttattaagtaggtctctatttaatagaagg 511

                                                                       
Query: 301 tcatgttcacaaattctggcttattatttcactatgttatattttttttgtcaatctgta 360
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 510 tcatgttcacaaattctggcttattatttcactatgctatattttttt-gtcaatctgta 452

                                                                       
Query: 361 tttttctttgagaacagagtctcaaaatatagctgcacattcagcccataacaccaa-ct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 451 tttttctttgagaacagagtctcaaaatatagctgcacattcagcccataacaccaagct 392

                                                                       
Query: 420 tatttgaacctgaagccctctcatcaatgcatcatccaggaacatataatattaccagag 479
           ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 391 tatttgaacctaaagccctttcatcaatgcatcacccaggaacatataatattaccagag 332

                                                                       
Query: 480 atggcaatgcactctgaagaactaatggtatttttaaaacttatagtaacaatccagaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atggcaatgcactctgaagaactaatggtatttttaaaacttatagtaacaatccagaat 272

                                                                       
Query: 540 agctattttaaattatccttttaaaacccaaaggtcttgggtcctcactagtatatcata 599
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agctattttaaattatctttttaaaacccaaaggtcttgggtcctcactagtatatcata 212

                      
Query: 600 aagatgagacc 610
           |||||||||||
Sbjct: 211 aagatgagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)