BAC Information

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BAC

Clone NameMSMg01-486I05
Chromosome11 (Build37)
Map Location 53,079,061 - 53,166,473
singlet/doubletdoublet
Overlap geneHspa4, Zcchc10, Aff4, LOC100040576
Upstream geneTcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneLeap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486I05.T7 (MSMg01no486_i05.b1)MSMg01-486I05.TJ (MSMg01no486_i05.g1)
ACCAG565699AG565700
length732750
length of high quality
(start - end)		568 (77 - 644)680 (71 - 750)
definitionCHROMAT_FILE: MSMg01no486_i05.b1 PHD_FILE: MSMg01no486_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:50 2005CHROMAT_FILE: MSMg01no486_i05.g1 PHD_FILE: MSMg01no486_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,079,061 - 53,079,628)(53,165,795 - 53,166,473)
sequence
GCGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAGAGGGC
GGAATTCTGAGGCTTTTCCCGAACTCACATGCATGTGAACCCTTCACACA
TGTAAAACTAAACATTCAACTATTCCAACAGTTACAACTATGTAACTCCC
AAACAGAAAATTTTCACTTTTTTTGGATTGTATGCATATGAATGTTTTGC
CTAATGTATGTAAGTGTCCATGTAGGGCAGAAAAGGATGTCAATTCTCTA
TAGCTATAGACAGAATGAGCCACCATGAGTGCTAAGACCAAAACTCCAGC
CTTTAAAGAGCCTGTCTGTGCTCCTACCACTCAGGTCTCGGCAGCATTTC
TTGGTAACATGACCACGCACACTAACACAGCTTCCTTTGAGTGTCCAAGG
ATTCCCCCTAGACCGCATCACCACGGGAGCAGGGTACTTACATCTTCACT
CACAAACTTCTCATATTCACCACTAAGTTTGTCTCTCATCTCATACACAT
ACTCTTCCACAGCATTCTTGGCGTCATTCCGTTCCTTCTCCAGTTTATCC
TGCATGATCATCTTACCCTGAAACAGAACAATGAATTAAACACGAGGACA
ACTATGACAATTTCCTCTTACACATCAACTAACATTAAAAGCAACAAGCT
TCCATTTCTTGAGTCACCCCTACAAAATAGACCCAGGAAATTAAAAAATT
GAAAAGCACAGATTTTGTAGGGGGTTTTTTTG

GATTGGAGGTGGAGAGTGGGGGCCGGCGGGGTTCCAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGATGCAGTAACCTGAAGACAGAAGAGACCACAT
GAATCTGAATGTAAAACTATGACATACAGAACATTAACTAAAATAAAAAC
ATTCTCTTTATAGGAATTAATCACACAACTTCACCAAGCACTGTATGTCA
CCTTACACCCCCAAACTGTGCAGCTTGATCCAAATCACACACCTCTAAGC
CCACCCCACCCCAACCAAACAGTAGAGATTTGGCTTTTGGCTATTCTCAA
GACTCCCTACCTTGTCTCCACCTGAAGCAAAATTTTACTTAAAATGTGCC
TACTGTTCCTACAGAGCCAACAAAAATCAGCCTGCAGATAGCCACAAACT
GAATGACAACTGCTGGTATTCATTTAAAAAGAAAAGAAAACAGACTGCGT
CTAGGTTTTCAGGAAGTTCATCATGAAAGGCAACTTTTTGAAAATAACTT
TTTAAAAAACAACTTTTTGAGACTTTTTGTTTGGAGACTGAGGGCTGCGA
AAGTTAGTGACAATAAGGAACATAAACCTGAAGAAGTTGAAGAAGCCAGC
TTTGTTAAAAACCAAGTGGCCACTTGCCAACACTTCTTTACGCATATGTG
ACCAAAGACGACGGAGTCTAGGCTTCCTCTTGGTCCACATCAGCTTCTCA
TCAAATCTCGAATTAAAAAGAATCTCATAAACATTTCAATACTGATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_i05.b1 MSMg01no486_i05.b1 CHROMAT_FILE:
MSMg01no486_i05.b1 PHD_FILE: MSMg01no486_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:50 2005
         (568 letters)



>mm_chr11_53078861_53079828
          Length = 968

 Score = 1036 bits (536), Expect = 0.0
 Identities = 560/568 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgcatgtgaacccttcacacatgtaaaactaaacattcaactattccaacagttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgcatgtgaacccttcacacatgtaaaactaaacattcaactattccaacagttaca 260

                                                                       
Query: 61  actatgtaactcccaaacagaaaattttcactttttttggattgtatgcatatgaatgtt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 actatgtaactcccaaacagaaaattttcacattttttggattgtatgcatatgaatgtt 320

                                                                       
Query: 121 ttgcctaatgtatgtaagtgtccatgtagggcagaaaaggatgtcaattctctatagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcctaatgtatgtaagtgtccatgtagggcagaaaaggatgtcaattctctatagcta 380

                                                                       
Query: 181 tagacagaatgagccaccatgagtgctaagaccaaaactccagcctttaaagagcctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagacagaatgagccaccatgagtgctaagaccaaaactccagcctttaaagagcctgtc 440

                                                                       
Query: 241 tgtgctcctaccactcaggtctcggcagcatttcttggtaacatgaccacgcacactaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgctcctaccactcaggtctcggcagcatttcttggtaacatgaccacgcacactaac 500

                                                                       
Query: 301 acagcttcctttgagtgtccaaggattccccctagaccgcatcaccacgggagcagggta 360
           ||||||||||||||||||||||||||||||||||||||| ||||  | |||||||||| |
Sbjct: 501 acagcttcctttgagtgtccaaggattccccctagaccggatcagtatgggagcagggca 560

                                                                       
Query: 361 cttacatcttcactcacaaacttctcatattcaccactaagtttgtctctcatctcatac 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 cttacatcttcactcacaaacttctcatattcaccactaagcttgtctctcatctcatac 620

                                                                       
Query: 421 acatactcttccacagcattcttggcgtcattccgttccttctccagtttatcctgcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatactcttccacagcattcttggcgtcattccgttccttctccagtttatcctgcatg 680

                                                                       
Query: 481 atcatcttaccctgaaacagaacaatgaattaaacacgaggacaactatgacaatttcct 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcatcttaccctggaacagaacaatgaattaaacacgaggacaactatgacaatttcct 740

                                       
Query: 541 cttacacatcaactaacattaaaagcaa 568
           ||||||||||||||||||||||||||||
Sbjct: 741 cttacacatcaactaacattaaaagcaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_i05.g1 MSMg01no486_i05.g1 CHROMAT_FILE:
MSMg01no486_i05.g1 PHD_FILE: MSMg01no486_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:51 2005
         (680 letters)



>mm_chr11_53165595_53166674
          Length = 1080

 Score = 1305 bits (675), Expect = 0.0
 Identities = 678/679 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagtaacctgaagacagaagagaccacatgaatctgaatgtaaaactatgacatacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gcagtaacctgaagacagaagagaccacatgaatctgaatgtaaaactatgacatacaga 820

                                                                       
Query: 61  acattaactaaaataaaaacattctctttataggaattaatcacacaacttcaccaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 acattaactaaaataaaaacattctctttataggaattaatcacacaacttcaccaagca 760

                                                                       
Query: 121 ctgtatgtcaccttacacccccaaactgtgcagcttgatccaaatcacacacctctaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctgtatgtcaccttacacccccaaactgtgcagcttgatccaaatcacacacctctaagc 700

                                                                       
Query: 181 ccaccccaccccaaccaaacagtagagatttggcttttggctattctcaagactccctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ccaccccaccccaaccaaacagtagagatttggcttttggctattctcaagactccctac 640

                                                                       
Query: 241 cttgtctccacctgaagcaaaattttacttaaaatgtgcctactgttcctacagagccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cttgtctccacctgaagcaaaattttacttaaaatgtgcctactgttcctacagagccaa 580

                                                                       
Query: 301 caaaaatcagcctgcagatagccacaaactgaatgacaactgctggtattcatttaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caaaaatcagcctgcagatagccacaaactgaatgacaactgctggtattcatttaaaaa 520

                                                                       
Query: 361 gaaaagaaaacagactgcgtctaggttttcaggaagttcatcatgaaaggcaactttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaaaagaaaacagactgcgtctaggttttcaggaagttcatcatgaaaggcaactttttg 460

                                                                       
Query: 421 aaaataactttttaaaaaacaactttttgagactttttgtttggagactgagggctgcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaataactttttaaaaaacaactttttgagactttttgtttggagactgagggctgcga 400

                                                                       
Query: 481 aagttagtgacaataaggaacataaacctgaagaagttgaagaagccagctttgttaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagttagtgacaataaggaacataaacctgaagaagttgaagaagccagctttgttaaaa 340

                                                                       
Query: 541 accaagtggccacttgccaacacttctttacgcatatgtgaccaaagacgacggagtcta 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 339 accaagtggccacttgccaacacttctttacgcatatgtgaccaaagacgacagagtcta 280

                                                                       
Query: 601 ggcttcctcttggtccacatcagcttctcatcaaatctcgaattaaaaagaatctcataa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggcttcctcttggtccacatcagcttctcatcaaatctcgaattaaaaagaatctcataa 220

                              
Query: 661 acatttcaatactgataag 679
           |||||||||||||||||||
Sbjct: 219 acatttcaatactgataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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