Query= MSMg01no486_k01.b1 MSMg01no486_k01.b1 CHROMAT_FILE:
MSMg01no486_k01.b1 PHD_FILE: MSMg01no486_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:59 2005
(585 letters)
>mm_chr11_3276815_3277799
Length = 985
Score = 1108 bits (573), Expect = 0.0
Identities = 582/585 (99%)
Strand = Plus / Minus
Query: 1 aattccaggatagttacggctacacagagaaaccctgtattcaaacaaacaaacaaaggg 60
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aattccaggatagctagggctacacagagaaaccctgtattcaaacaaacaaacaaaggg 779
Query: 61 aggtagccgtccttacagtgagaaatgtaatgagaacatgtgcatgcataacaagcttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aggtagccgtccttacagtgagaaatgtaatgagaacatgtgcatgcataacaagcttac 719
Query: 121 ctctgtgtctatctcgggggtctccatgttttctagtctgaagactaagtacctacactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctctgtgtctatctcgggggtctccatgttttctagtctgaagactaagtacctacactt 659
Query: 181 ctggagcactcgcctttcagggcgaggtaatggggtgcagttatgtacgctgcccaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctggagcactcgcctttcagggcgaggtaatggggtgcagttatgtacgctgcccaggct 599
Query: 241 gactgtgagactgagctcaggctgtgattccaccagccatgactaagacaccacactcat 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 598 gactgtgagactgagctcaggctgtggttccaccagccatgactaagacaccacactcat 539
Query: 301 caggtattacaggaagaaaagagaatacaacttggcttctgggtagaatgtaagttgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 caggtattacaggaagaaaagagaatacaacttggcttctgggtagaatgtaagttgaaa 479
Query: 361 ttaggaatggcaaaccgcacatgttcagtagcgccaccccgttatgtgccgtgtcctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttaggaatggcaaaccgcacatgttcagtagcgccaccccgttatgtgccgtgtcctgat 419
Query: 421 tattagagaaggtcattcttgtgcactgaaagggagggacagtgatgcagccactcatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tattagagaaggtcattcttgtgcactgaaagggagggacagtgatgcagccactcatgt 359
Query: 481 ggctccagagaacctggagaatggcgttgacacccaaggtctaatcactctgtctggcga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggctccagagaacctggagaatggcgttgacacccaaggtctaatcactctgtctggcga 299
Query: 541 tgcgaatctgctatcaaatagaaatagaagtcactgactggccca 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcgaatctgctatcaaatagaaatagaagtcactgactggccca 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_k01.g1 MSMg01no486_k01.g1 CHROMAT_FILE:
MSMg01no486_k01.g1 PHD_FILE: MSMg01no486_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:59 2005
(615 letters)
>mm_chr11_3113402_3114413
Length = 1012
Score = 1160 bits (600), Expect = 0.0
Identities = 611/616 (99%), Gaps = 4/616 (0%)
Strand = Plus / Plus
Query: 1 cattgttggaaagttgttgttttagtagcactatgactgaggaaggtctttcaagggtta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cattgttggaaagttgttgttttagtagcactatgactga---aggtctttcaagggtta 257
Query: 61 atagcatggccatcaactaaccagtactgaaactacaactacagaatgccttggttacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atagcatggccatcaactaaccagtactgaaactacaactacagaatgccttggttacag 317
Query: 121 tcacagagcggatttaaatccaggagtcttcatgccagagttttttccccagacctgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcacagagcggatttaaatccaggagtcttcatgccagagttttttccccagacctgtgg 377
Query: 181 ttctcttgctgtgttttcacttctttaacattgtgctgtggagaagttgaaggagggctt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 ttctcttgctgtgttttcacttctttaactttgtgctgtggagaagttgaaggagggctt 437
Query: 241 tgagacctttatcccaaagcccttgtgttttaggttccttgagaaaaagcaaagggcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgagacctttatcccaaagcccttgtgttttaggttccttgagaaaaagcaaagggcttt 497
Query: 301 ggtttgaataagctagctaaaaatgatctgaaaatatacaataatactacattatatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggtttgaataagctagctaaaaatgatctgaaaatatacaataatactacattatatttc 557
Query: 361 tttttttcttttttttttt-cctaaggtttatttatttatatgagtacactgttggtgtc 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttttttcttttttttttttcctaaggtttatttatttatatgagtacactgttggtgtc 617
Query: 420 ttcagacactccagaagagggcattagatcccattacagatggttgtgagccaccatgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttcagacactccagaagagggcattagatcccattacagatggttgtgagccaccatgtg 677
Query: 480 gttgctgggatttgaactcaggaccttcggaagagcagtcggtgctcttaactgctgagc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gttgctgggatttgaactcaggaccttcggaagagcagtcggtgctcttaactgctgagc 737
Query: 540 catctctgcagccctcctattatgtttcctaaggttaccttagtactttctttttgttgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catctctgcagccctcctattatgtttcctaaggttaccttagtactttctttttgttgt 797
Query: 600 tgttgtggggaaggat 615
||||||||||||||||
Sbjct: 798 tgttgtggggaaggat 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1012
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1002
Effective search space: 606210
Effective search space used: 606210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
