CAACAAAGAGCTCTTGGCTGACTTTCATATTTTGTCGGTTACATTTGTGT
AGCGTTTCCCTGTGCTAATTTTTTCTTGTCGGCGGAGTTGTTGGTGTGCC
CCGGTGGGGGCTCCGGTCTTTCAAAAATAAACTTACGCGTGTTGTGGTAC
CCATTTATCCTAATCGTTTTTTGCCGAATATATGGCCCCCCTCAGATGGG
GGGTATTCGCGTAGATCTATGTGACGTATCTGTCGTCGAGGNTATCTATC
GTCTCACGGATTGT

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTATAAACCAGGCTGGC
CTTGAATTCAGAGACTCTGCTGCCTGGGTACTGGGATTAAAGTCCTGTGC
TAGCACACCTGCTTATGGACGTGTCTTCGTAATTGAGGGTCCCTGCTCTG
ATAATTTTAGCTTGTGTTAAGTTGACATAAAACCATCACGGCACTCTCCA
AGCGTTCTGGGCACTTCCAAAGTCTAGAGTGAGCTGGGGAGGGGAGGGGC
AGGGACCAGAGAGGTAGCCTGTTGGAGGAATGGCCTTGCTAAGCAGCAAG
GAGACGCAGGTCTCCAGAAAGCTGTGACAGCACACACCGGGGGCTGTATC
TCTTCAGGAGGCTGAGGCAGGAGGATCACAAGCAAGTCCTGCCTACATTG
TGAGATCCTGTTTCAAAATTTAAATTTTTCTTTAAAAAATAAAAAGAGAG
CTCCAGATATACAAACCCGGAGTGTTTGCCCGGCATGCTCAAGTAGTTCC
CAACTCGGTCTAAAGACAGCAGCAAGCCACAAGCAGCCTTTCCCTTGTGC
AGCAAGCACAGGTTGCTGTGCGTCGGATCCGTTGTCCAGAGCTTTCGTAC
AGGCTGAGGATGGGGTGACTCATAAATTTACCACATCTCTCAAGGGTGGT
CACTTGGGGCTGTCATCTCTGAATGCTGTTTGTTCTCCAGCCTGTTCCAA
N

Query= MSMg01no486_n02.g1 MSMg01no486_n02.g1 CHROMAT_FILE:
MSMg01no486_n02.g1 PHD_FILE: MSMg01no486_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:13 2005
         (612 letters)



>mm_chr11_3274912_3275923
          Length = 1012

 Score = 1120 bits (579), Expect = 0.0
 Identities = 605/615 (98%), Gaps = 3/615 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctataaaccaggctggccttgaattcagagactctgctgcctgggtactgggattaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actctataaaccaggctggctttgaattcagagactctgctgcctgggtactgggattaa 598

                                                                       
Query: 61  agtcctgtgctagcacacctgcttatggacgtgtcttcgtaattgagggtccctgctctg 120
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 597 agtcctgtgctagcacacctgcttatggacacgtcttcgtaattgagggtccctgctctg 538

                                                                       
Query: 121 ataattttagcttgtgttaagttgacataaaaccatcacggcactctccaagcgttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 537 ataattttagcttgtgttaagttgacataaaaccatcacggcactctccaagtattctgg 478

                                                                       
Query: 181 gcacttccaaagtctagagtgagctggggaggggaggggcagggaccagagaggtagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gcacttccaaagtctagagtgagctggggaggggaggggcagggaccagagaggtagcct 418

                                                                       
Query: 241 gttggaggaatggccttgctaagcagcaaggagacgcaggtctccagaaagctgtgacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gttggaggaatggccttgctaagcagcaaggagacgcaggtctccagaaagctgtgacag 358

                                                                       
Query: 301 cacacaccgggggctgtatctcttcaggaggctgaggcaggaggatcacaagcaagtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cacacaccgggggctgtatctcttcaggaggctgaggcaggaggatcacaagcaagtcct 298

                                                                       
Query: 361 gcctacattgtgagatcctgtttcaaaatttaaatttttctttaaaaaataaaaagagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gcctacattgtgagatcctgtttcaaaatttaaatttttctttaaaaaataaaaagagag 238

                                                                       
Query: 421 ctccagatatacaaacccggagtgtttgcccggcatgctcaagtagttcccaactcggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctccagatatacaaacccggagtgtttgcccggcatgctcaagtagttcccaactcggtc 178

                                                                       
Query: 481 taaaga---cagcagcaagccacaagcagcctttcccttgtgcagcaagcacaggttgct 537
           ||||||   ||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 177 taaagacagcagcagcaagccacaagcagcctttccctcgtgcagcaagcacaggttcct 118

                                                                       
Query: 538 gtgcgtcggatccgttgtccagagctttcgtacaggctgaggatggggtgactcataaat 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gtgcgtcggatccgttgtccagagctttcgtacaggctgaggatggggtgactcataaat 58

                          
Query: 598 ttaccacatctctca 612
           |||||||||||||||
Sbjct: 57  ttaccacatctctca 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)